Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1867 181 2e-40 seq1332 167 5e-36 seq1873 163 6e-35 >seq1867 Length=410790 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| ||||||| |||||| |||||||| || || |||||||| | | | | |||| Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || ||||||||||| ||||| || || || | ||| || || || || || ||||||||| Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| || || ||||| || ||| | | || || || | || || Sbjct 291334 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 291393 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 291394 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||| || |||||||||||||| || || || ||||| | | | |||| Sbjct 291898 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 291957 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || ||||||||||| ||||| || || || | ||| || || || || || ||||||||| Sbjct 291958 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 292017 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| || || ||||| || ||| | | || || || | || || Sbjct 292018 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 292077 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 292078 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||| || |||||||||||||| || || || ||||| | | | |||| Sbjct 292126 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 292185 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| || || || | ||| || || || || || ||||||||| Sbjct 292186 TCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 292245 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| || || ||||| || || ||| || || || | ||| || Sbjct 292246 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATA 292305 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 292306 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||| || |||||||||||||| || || || ||||| | | | |||| Sbjct 291442 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 291501 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| || || || | ||| || || || || || ||||||||| Sbjct 291502 TCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291561 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| || || ||||| || ||| | | || || || | || || Sbjct 291562 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 291621 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 291622 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| ||| || |||||||||||||| || || || ||||| | | | |||| Sbjct 291670 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 291729 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| || || || | ||| || || || || || ||||||||| Sbjct 291730 TCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291789 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| || || ||||| || ||| | | || || || | || || Sbjct 291790 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 291849 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 291850 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| |||||||| || || || ||||| || ||| ||| ||| Sbjct 315020 ACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC 315079 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| || ||||| || | | || || || || || || ||||| || Sbjct 315080 GTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTT 315139 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||| ||||| ||||| | | ||| ||||| | || || Sbjct 315140 GTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGAT 315199 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||| ||||| |||||||||||||| Sbjct 315200 CGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || ||||| |||||||| || || || ||||| || Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| ||||||||| |||||||| || ||||| || | | || || || || || Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| || |||||||| ||||| ||||| | | ||| ||| Sbjct 315357 ATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACT 315416 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | ||||| || ||||| |||||| Sbjct 315417 TCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 >seq1332 Length=523337 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || ||||| ||||| || || || || || || ||| | | ||| Sbjct 494229 CGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCG 494288 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || || ||||| || || | |||||| || || || || ||||||||| Sbjct 494289 TCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTA 494348 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| || || || |||||||| || |||||| | | ||| |||||||||||||| Sbjct 494349 TCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATG 494408 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||||||| || || || ||||||||||| Sbjct 494409 GTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 165 bits (182), Expect = 2e-35 Identities = 179/237 (76%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 82574 TTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATT 82633 |||||| ||| || | |||||| || || || || ||||| ||||| || || || || Sbjct 493982 TTATCA---ACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTT 494038 Query 82634 ATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG 82693 |||||||| ||| | | ||||||||| | || || || ||||| || | | || || Sbjct 494039 GTAATCAGAGAGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTG 494098 Query 82694 ATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATT 82753 ||||||||| || || ||||||||||||||||| ||||| || || || ||||||||| | Sbjct 494099 ATCTGGAGGAATGCCCTCCTTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACT 494158 Query 82754 AGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||| ||| || ||||| || || | ||| || ||||| || ||||| Sbjct 494159 AGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || ||||| | ||| ||||| ||||| || || || || || ||||| Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || |||||||| ||||| || || || || | | || ||||| || || Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||||||||| || || ||||| || || |||||| | | || || Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACC 494624 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| ||||| |||||||||||||| || || |||||||| Sbjct 494625 TCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1873 Length=396352 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | |||| || ||||||||||| || || |||||||| ||| | | ||| Sbjct 292703 CGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCG 292644 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || || || | || ||||||||||||||| || |||||||| Sbjct 292643 TCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATCCCTTCCTTG 292584 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| |||||||| || ||||| | ||| || || | || || Sbjct 292583 TCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCAAGCGTAATA 292524 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 292523 GTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981772503633972