Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1867 123 2e-23 seq2115 89.7 5e-13 seq1332 82.4 7e-11 >seq1867 Length=410790 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || |||||||| || || |||| |||||| || || |||| Sbjct 291232 GTAGACTCTTTCTGGATGTTGTAATCAGACAAAGT--ACGACCGTCCTCTAGTTGTTTGC 291289 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || || |||||||| || |||||||||||||| || ||||| | Sbjct 291290 CAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTT 291349 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||| ||| || |||| ||||| || ||||| ||||| | Sbjct 291350 TCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCG 291409 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 291410 TCTTCACAAAAATCTGCAT 291428 Score = 116 bits (128), Expect = 4e-21 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| || |||||||| || ||||| || || || |||| |||||| || || ||| Sbjct 291915 GGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGT--ACGACCGTCCTCTAGTTGTTTG 291972 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || || |||||||| || |||||||||||||| || ||||| Sbjct 291973 CCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCT 292032 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| ||| ||| || |||| ||||| || ||||| ||||| Sbjct 292033 TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGC 292092 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 292093 GTCTTCACAAAAATCTGCAT 292112 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| || |||||||| || ||||| || || || |||| ||| || | || ||| Sbjct 291459 GGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGT--ACGACCGTCTTCCAATTGTTTG 291516 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || || |||||||| || |||||||||||||| || ||||| Sbjct 291517 CCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCT 291576 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| ||| ||| || |||| ||||| || ||||| ||||| Sbjct 291577 TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGC 291636 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 291637 GTCTTCACAAAAATCTGCAT 291656 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| || |||||||| || ||||| || || || |||| ||| || | || ||| Sbjct 291687 GGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGT--ACGACCGTCTTCCAATTGTTTG 291744 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || || |||||||| || |||||||||||||| || ||||| Sbjct 291745 CCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCT 291804 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| ||| ||| || |||| ||||| || ||||| ||||| Sbjct 291805 TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGC 291864 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 291865 GTCTTCACAAAAATCTGCAT 291884 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||||||| || || ||| ||| || || || ||||| Sbjct 315267 GTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC-GTCTTCAAGTTGTTTGCC 315325 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | ||||||||||| || ||||||||||||||||| ||||| ||| Sbjct 315326 GGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTTCGCCTT 315385 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||||| ||| || || || || || Sbjct 315386 TACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTTCCCAGTAAGTGT 315445 Query 133643 TTTTACGAAAATCTGCATGGCTTATT 133668 || ||||| || ||||| ||| ||| Sbjct 315446 CTTCACGAATATTTGCATTGCTAATT 315471 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||||||| || || ||| ||| || || || ||||| Sbjct 315039 GTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC-GTCTTCAAGTTGTTTGCC 315097 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | ||||||||||| || ||||||||||| ||||| ||||| ||| Sbjct 315098 GGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTT 315157 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||||| || || |||||||| || Sbjct 315158 CACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGT 315217 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 315218 CTTCACAAATATCTGCATG 315236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| || |||||||| || ||||| || || || |||| ||| || | || ||| Sbjct 292143 GGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGT--ACGACCGTCTTCCAATTGTTTG 292200 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || || |||||||| || |||||||||||||| || ||||| Sbjct 292201 CCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCT 292260 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| |||||| | | ||| || || | |||| || ||||| ||||| Sbjct 292261 TTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTGCCAGTCAGC 292320 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 292321 GTCTTCACAAAGATCTGCAT 292340 >seq2115 Length=135315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 || |||||| || |||||||| || || || |||||||| | ||| ||||| | ||||| Sbjct 37792 GGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGTGAGCTATACTCAATAATCTC 37851 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||||| || || || ||| |||| | || |||||| ||| |||||||| Sbjct 37852 TGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTGGACTTCCTGTTGCA 37911 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 || ||||||||||||||| | || || ||||| | ||| Sbjct 37912 AGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTG 37953 >seq1332 Length=523337 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| ||||||||| |||| | |||||||| || || || ||||||||||| Sbjct 494517 TCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTA 494576 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | ||| | || || | | ||| || |||| || | | Sbjct 494577 TCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATG 494636 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || || || |||| || || |||||||||||||| || Sbjct 494637 GTCTTTCCTGTCAACGTCTTCACGAAAATCTGCATCGC 494674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483394526079520