Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1867 167 2e-36 seq1332 136 3e-27 seq1873 98.7 7e-16 >seq1867 Length=410790 Score = 167 bits (184), Expect = 2e-36 Identities = 186/246 (76%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 33505 ATACAAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTT 33564 |||| |||||| | |||||| | | ||| | ||||| ||| |||||| |||||| Sbjct 314991 ATACGAATAAATGATTAACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTT 315050 Query 33565 TGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAA 33624 || |||||||||||||| || || || |||| || | |||||| ||||||||||||||| Sbjct 315051 TGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAA 315110 Query 33625 CGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-AC 33683 |||||||| || | || | ||||||||||| ||| ||| ||| |||| || | Sbjct 315111 CGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTC-ACATTCTCAAT 315169 Query 33684 GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGAT 33743 ||| ||||||| ||| || |||| |||||||| ||||| || | || || ||||| || Sbjct 315170 GGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATAT 315229 Query 33744 CTGCAT 33749 |||||| Sbjct 315230 CTGCAT 315235 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| |||||||| |||||||||||||| Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | |||||| ||||||||||||||||||||||| || | || Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| ||| | | |||| || | ||| ||||||| ||| || Sbjct 315357 ATGCCTTCCTTGTCTTGAATCTTC-GCCTTTACATTCTCAATGGTATCGCTTGCTTCAAC 315415 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || || || ||||| Sbjct 315416 TTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| || || | ||| || |||| ||||||||||| || || ||| Sbjct 292150 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 292209 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | || ||||| || | || | ||||| || || ||| ||| |||| || | Sbjct 292210 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTC-ACGTT 292268 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||||| | || || |||| ||||| || || || || | ||| || || Sbjct 292269 CTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCAC 292328 Query 33738 AAAGATCTGCATAGT 33752 |||||||||||| || Sbjct 292329 AAAGATCTGCATCGT 292343 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || || ||||| || | ||| |||||| || ||||||||||| || Sbjct 291201 ACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGA 291260 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || | |||||| || || ||||| | || ||||| || | || Sbjct 291261 CAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291320 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| ||| |||| || | || | ||||| || | || | Sbjct 291321 GATGCCTTCCTTATCTTGAATCTTCGCTTTC-ACGTTCTCAATTGTGTCACTGGCCTCGA 291379 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||| || ||||| ||||||||| Sbjct 291380 CCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291429 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| || || | ||| || |||| ||||||||||| || || ||| Sbjct 291466 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291525 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | || ||||| || | || | ||||| || || ||| ||| |||| || | Sbjct 291526 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTC-ACGTT 291584 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| || | || || || | ||||| || || || || | ||| || || Sbjct 291585 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291644 Query 33738 AAAGATCTGCATA 33750 ||| ||||||||| Sbjct 291645 AAAAATCTGCATA 291657 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| || || | ||| || |||| ||||||||||| || || ||| Sbjct 291694 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291753 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | || ||||| || | || | ||||| || || ||| ||| |||| || | Sbjct 291754 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTC-ACGTT 291812 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| || | || || || | ||||| || || || || | ||| || || Sbjct 291813 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291872 Query 33738 AAAGATCTGCATA 33750 ||| ||||||||| Sbjct 291873 AAAAATCTGCATA 291885 >seq1332 Length=523337 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | |||||| | ||||||||| |||||| || ||||| ||||||||||| || Sbjct 493988 ACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 494047 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| ||||| || || || |||||||||||||||||||||||| | || Sbjct 494048 GAGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGG 494107 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || | || ||| | || | || || || | || | Sbjct 494108 AATGCCCTCCTTATCTTGAATCTT-AGCTTTAACGTTCTCGATCGTATCACTAGCCTCGA 494166 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || |||| |||||| ||||| || ||||| Sbjct 494167 CCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| || | || | || ||||| || ||||| |||||||| || || Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||||| || || |||||||| ||||||||||| | || Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || ||| |||| || | ||| || || | || || Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTC-ACATTCTCGATGGTATCACTCGCCTCAAC 494623 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || ||||| ||||| || || || |||||||| Sbjct 494624 CTCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1873 Length=396352 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | |||| ||| | ||| ||||| || ||||||||||| || Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| ||| ||||| || |||||||| || || |||||| | || Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || | || |||| || | ||| || || ||| || Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTT-GGCTTTGACATTTTCGATGGTATCCGATGCTTCAAC 292537 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||| || || || || || | || || || ||||||||||| Sbjct 292536 CTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328686581564160