Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1332 123 6e-23 seq1867 100 7e-16 >seq1332 Length=523337 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| |||||| | ||||| ||||| || ||||||||||| ||| ||| Sbjct 494440 CAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGTGAT 494381 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| || ||||| || || ||||| ||| || ||| ||| Sbjct 494380 ACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAACAA 494321 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| |||||||| ||| | ||| | | || |||||| || Sbjct 494320 CGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAACATC 494261 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||||||||| || ||||||||| | ||||||| Sbjct 494260 CAAAAAGAGTCTACGCTCCACCTTGTTCTCCGACTTCG 494223 >seq1867 Length=410790 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || ||||| | || || || |||| Sbjct 291425 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291366 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||||||||| || ||||| || || ||| || Sbjct 291365 ACAATTGAGAACGTGAAAGCGAA-GATTCAAGATAAGGAAGGCATCCCACCTGACCAGCA 291307 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| ||||| || || || | || || || | |||||| | ||||||||| | Sbjct 291306 ACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAACAT 291247 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||||||| | ||| | |||||| | ||||| Sbjct 291246 CCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCG 291208 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || |||||| | || || || | ||| Sbjct 292337 CAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCTAGCGAC 292278 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||||||||| || ||||| || || ||| || Sbjct 292277 ACAATTGAGAACGTGAAAGCGAA-GATTCAAGATAAGGAAGGCATCCCACCTGACCAGCA 292219 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| ||||| || || || |||||||| || | || ||| | || |||||| | Sbjct 292218 ACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACAT 292159 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| ||||| |||||||| || Sbjct 292158 CCAGAAAGAATCTACCCTTCACCTAGT 292132 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || ||||| | || || || |||| Sbjct 291653 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291594 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||||||||| || ||||| || || ||| || Sbjct 291593 ACAATTGAGAACGTGAAAGCGAA-GATTCAAGATAAGGAAGGCATCCCACCTGACCAGCA 291535 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| ||||| || || || |||||||| || | || ||| | || |||||| | Sbjct 291534 ACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACAT 291475 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| ||||| |||||||| || Sbjct 291474 CCAGAAAGAATCTACCCTTCACCTAGT 291448 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || ||||| | || || || |||| Sbjct 291881 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291822 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||||||||| || ||||| || || ||| || Sbjct 291821 ACAATTGAGAACGTGAAAGCGAA-GATTCAAGATAAGGAAGGCATCCCACCTGACCAGCA 291763 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| ||||| || || || |||||||| || | || ||| | || |||||| | Sbjct 291762 ACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACAT 291703 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| ||||| |||||||| || Sbjct 291702 CCAGAAAGAATCTACCCTTCACCTAGT 291676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181754962240508