Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1867 86.0 6e-12 seq2115 84.2 2e-11 >seq1867 Length=410790 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| ||| || || || ||||| || ||||| |||| | Sbjct 315042 GATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCA 315101 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | |||||| || || || || ||||||||||| || ||| || |||| Sbjct 315102 AAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACA 315161 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | || ||||| | || | ||| ||||| ||||| || || Sbjct 315162 TTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTC 315221 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 315222 ACAAATATCTGCATG 315236 >seq2115 Length=135315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 222/332 (67%), Gaps = 14/332 (4%) Strand=Plus/Plus Query 146686 GATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCAT---GCGTTTT 146742 ||||| ||||| || || |||| ||||| |||||||| || || || ||| | Sbjct 36749 GATTGACTTTGGTCGATAAAAGGCCCTCGGTCAGCCGCCATGTCGATTATCTTGCGCTGA 36808 Query 146743 GTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATG 146802 | | |||||| ||||||||| || |||| | || ||||| |||| ||| Sbjct 36809 GAA---AGTTCCCATATGGTTTTGTAGAGAGCCTTTATTTCGTCAGGAATGCCTTGAATA 36865 Query 146803 TTTTGAATAGAGCCCTTGTGCGCAAAAATAGTG---TTTCGTATTTCGGGCGTGTAAAGG 146859 | |||| ||| || | || || | ||| | | || || ||||| | ||| Sbjct 36866 TCCTGAACAGAACCTTGGTTTGCCACAATCGCGGACTTGAGTTCTTCGGACCA-TAATCC 36924 Query 146860 TTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGC 146919 | | ||| |||||||||| || | ||| | || || | ||| || || || ||| Sbjct 36925 T--AATTTGTTGAGGTCATCCATCAGATAGGGGTTAACGATTTGGAATTCACCACTGAGC 36982 Query 146920 ACACGTCTGAGA-TACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATAT 146978 || || | |||| || || |||||||||||||| |||| ||| ||||| || || || || Sbjct 36983 ACGCGGC-GAGAGTAGACGTTGCTAGTGAAAGGTTCAATAGATTCATTGTTTCCCAAGAT 37041 Query 146979 TTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 ||| || || | ||| || ||||| ||||| Sbjct 37042 TTGTGCTGTCGATGCAGTTGGCATTGGCGCCA 37073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476585296181280