Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1867 105 6e-18 >seq1867 Length=410790 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | ||||| || ||||||| | ||||| ||||| | Sbjct 315236 CATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAG 315177 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || ||| | || || || ||| || ||||| || || || || || || Sbjct 315176 CGATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCA 315117 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| | |||||||||||| ||||| | | ||| | | ||||||||| Sbjct 315116 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315057 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || |||||||||||||| | ||| | ||| Sbjct 315056 CATCCAAAAAGAATCCACTCTCCATCTGGTG 315026 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||| | || || || | ||||| | ||||| ||||| | | Sbjct 315463 ATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGC 315404 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | ||||| || ||| || || || || || || || || ||| Sbjct 315403 GATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 315344 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | |||||||||||| ||||| | | ||| | | ||||||||| Sbjct 315343 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315284 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || |||||||||||||| | ||| | ||| Sbjct 315283 ATCCAAAAAGAATCCACTCTCCATCTGGTG 315254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || || | ||||| |||| ||||| |||| Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| || ||| ||||| || || || || || || ||| Sbjct 292052 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291993 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | || |||| || ||||||||||| || || | | | | |||| || |||| Sbjct 291992 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTC--TGACTACA 291935 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 | || || |||||||| ||| |||| ||||| Sbjct 291934 ACATCCAGAAAGAATCTACCCTTCACCTAGTG 291903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445070209119360