Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1867 95.1 1e-14 >seq1867 Length=410790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || |||| || ||||| || ||| | ||| ||| | || Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| || ||| |||||||||||| | || ||| || Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| ||||||||| | ||||| | |||| || |||||||||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGAT 106494 || ||||||||||| || || ||| | || | | |||| || || |||| || Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGGTTAATCAT 315001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| || || || ||| | ||||| |||||||| ||| | ||| ||| | | Sbjct 315464 AATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAG 315405 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | ||| | || || || ||| ||||| |||||| | || ||| || Sbjct 315404 CGATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCA 315345 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | |||| ||| ||||||||| | ||||| | |||| || ||||||||| Sbjct 315344 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315285 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 ||| ||||||||||| || || ||| Sbjct 315284 CATCCAAAAAGAATCCACTCTCCAT 315260 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||||||||||| || ||| | || || || | Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| || ||| || || |||||| | || ||| || Sbjct 291368 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291309 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||||| || ||||||||| |||| || | ||| || ||||||||| Sbjct 291308 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAAC 291249 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAA 106490 || || ||||| ||||| | || || || ||| | | || || || ||| Sbjct 291248 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGGTTAA 291198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||||||||||| || ||| | || || || | Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| || ||| || || |||||| | || ||| || Sbjct 291596 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291537 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||||| || ||||||||||| ||||| | || || || |||||| Sbjct 291536 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291477 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||||||||| || || |||| Sbjct 291476 ATCCAGAAAGAATCTACCCTTCACCTAGT 291448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||||||||||| || ||| | || || || | Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| || ||| || || |||||| | || ||| || Sbjct 291824 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291765 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||||| || ||||||||||| ||||| | || || || |||||| Sbjct 291764 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291705 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||||||||| || || |||| Sbjct 291704 ATCCAGAAAGAATCTACCCTTCACCTAGT 291676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402308280051584