Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1996 127 3e-23 seq1313 100 4e-15 seq1960 96.9 5e-14 seq646 93.3 6e-13 >seq1996 Length=225451 Score = 127 bits (140), Expect = 3e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||| |||||||||||| |||| | ||||| ||| | Sbjct 11457 ATCTACAAGGTCCTCCGTCAGGTGCACCCCGACACCGGTATCTCATCC------AAGGCT 11404 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| || |||||||||||||| | || || || | | ||||| || | Sbjct 11403 ATGTCGATCATGAATTCCTTTGTCAACGACATCTTTGAGCGTATTGCCGCCGAGTCCAGC 11344 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || |||||||| || ||| || | || |||||||| || || Sbjct 11343 CGCCTCGCTCACTATAACAAGCGGTCGACCATCACCAGCAGAGAAATCCAGACTGCTGTC 11284 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | || ||| |||||| ||||||||| ||||||||||| Sbjct 11283 CGTCTTCTCCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCCGAGGGCAC 11234 >seq1313 Length=540921 Score = 100 bits (110), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| ||| |||||||||||| |||| | || ||| ||| | Sbjct 389482 ATTTACAAGGTCCTCCGTCAGGTGCACCCCGACACCGGT-----AT-CTCGTCGAAGGCT 389429 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || |||||| || | || ||||| | | ||||| || | Sbjct 389428 ATGTCAATCATGAATTCCTTCGTCAACCGCAACTTTGAGCGCATTGCCGCCGAGTCCAGC 389369 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| || | || |||||||| ||||| Sbjct 389368 CGTCTGGCTCACTACAACAAGCGCTCAACCATCACCAGCAGAGAAATCCAGACTGCCGTC 389309 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | || ||| |||||| | ||||||| ||||||| ||| Sbjct 389308 TGTCTTCTCCTTCCTGGTGAATTGGCCAAGGACGCCGTTTCCGAGGACAC 389259 >seq1960 Length=267262 Score = 96.9 bits (106), Expect = 5e-14 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||| |||||||| ||| |||||||||||| |||| | ||| || | || Sbjct 206267 CTATATTTACAAGGTCCTCTGTCAGGTGCACCCCGACACCGGT-----ATCTTCTCA-AA 206214 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | | |||| | |||||||| |||||||||||||| | || ||||| | | | ||| | Sbjct 206213 GGC--TGTCACTTATGAACTCCTTTGTCAACGACATCTTTGAGCGCATTGCCGCTGAGTC 206156 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 | | || || || | || ||||||| || || ||| || | || ||| |||| || Sbjct 206155 CAGCCGTCTCGCTCACTACAACAAGAGCTCGACCATCACCAGCAGAGAAATCTAGACTGC 206096 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || || | || || |||||| ||||||||| ||||||||||| Sbjct 206095 TGTCCGTCTTCTCCTTGTTGGTAAATTGGCCAAGCACGCCGTATCCGAGGGCAC 206042 >seq646 Length=63027 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| || ||||| |||| || || | | ||| Sbjct 24719 AAGGCGATGTCGATCATGAACTCGTTTGTGAATGACATTTTCGAGCGTATTGCTGCTGAG 24778 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || || | || ||||||||| |||||| | | ||||||||||| Sbjct 24779 TCTAGCCGTCTTGCCCACTACAACAAGCGTTCGACGATCACTAGCAGAGAGATCCAGACT 24838 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 24839 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCTAAGCATGCGGTTTCTGAGGGGAC 24894 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| || ||||| |||| || || | | ||| Sbjct 25326 AAGGCGATGTCGATCATGAACTCGTTTGTGAATGACATTTTCGAGCGTATTGCTGCTGAG 25385 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || || | || ||||||||| |||||| | | ||||||||||| Sbjct 25386 TCTAGCCGTCTTGCCCACTACAACAAGCGTTCGACGATCACTAGCAGAGAGATCCAGACT 25445 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 25446 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCTAAGCATGCGGTTTCTGAGGGGAC 25501 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| || ||||| |||| || || | | ||| Sbjct 33271 AAGGCGATGTCGATCATGAACTCGTTTGTGAATGACATTTTCGAGCGTATTGCTGCTGAG 33330 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || || | || ||||||||| |||||| | | ||||||||||| Sbjct 33331 TCTAGCCGTCTTGCCCACTACAACAAGCGTTCGACGATCACTAGCAGAGAGATCCAGACT 33390 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 33391 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCTAAGCATGCGGTTTCTGAGGGGAC 33446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177391827408376