Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1867 122 8e-23 seq1332 116 3e-21 >seq1867 Length=410790 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | | ||||| ||| | || || ||||| ||||||||||||| | Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || || || || ||||| ||||| ||||||||||| | || Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || ||||| ||||| ||||| | | | | || ||||| | ||| || Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| ||||| |||| || ||||||||||||||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | || || ||||| ||||||||||||| | Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || || || || ||||| ||||| ||||||||||| | || Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||||| ||| | | | | | || ||||| | ||| || Sbjct 315357 ATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACT 315416 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | ||||| || || || || | || ||||| ||||| |||||| Sbjct 315417 TCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 35505 TATTT--CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 ||||| |||||||| | | ||| ||||| || || ||| ||| || || |||||||| Sbjct 291195 TATTTAACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTA 291254 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 ||| | ||| || || |||| || || || || || || || || | || |||||||| Sbjct 291255 ATCAGACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTC 291314 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | || | || ||||| || ||||| |||| | | | ||||| || | Sbjct 291315 AGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGC 291374 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| | ||||| || || || |||| || |||||||| |||||||| Sbjct 291375 CTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 >seq1332 Length=523337 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| || | | ||||||||| | || |||||||||||||||||||| | Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || ||||| ||||| |||||||| || | |||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | || |||||| | | ||| || |||| | ||| | | ||| || || | || || Sbjct 494109 ATGCCCTCCTTAT-CTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || || || | ||||| ||||| || ||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 |||| ||| ||||| |||||||| || | | || || |||| |||| ||||| || Sbjct 494246 CGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCCAATTGCTTCCC 494305 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-T 35657 ||||| |||| || || ||||| | |||| | ||||| ||| ||| ||| || | Sbjct 494306 TGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCC-TGAATTTTCGCCT 494364 Query 35658 TCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 | | | || | | || || || ||||| || |||| || || ||||| || ||||| | Sbjct 494365 TGACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTCCCTGTCAATG 494424 Query 35718 TTTTCACAAATATCTGCAT 35736 |||| || ||||||||||| Sbjct 494425 TTTTGACGAATATCTGCAT 494443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450769099367840