Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1456 132 7e-26 seq2115 87.8 2e-12 >seq1456 Length=366961 Score = 132 bits (146), Expect = 7e-26 Identities = 229/333 (69%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | |||||| || || | || |||||| |||||||| ||||| || || || Sbjct 311139 ATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGC 311198 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||| | || |||||||| | | || | || ||| || ||| || || | || Sbjct 311199 GATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTC 311258 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||||||| || ||||||||||||||| || ||||| || || || |||| | || Sbjct 311259 GACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGAT 311318 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 || | ||| || | | ||||||||||| | | ||| || || | ||| || Sbjct 311319 GAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGAC 311378 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 || ||| | ||||||||||| || |||| || || || | | ||| | ||| | || Sbjct 311379 CTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 311438 Query 40177 TTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||| || || || | |||||||| || ||| || Sbjct 311439 TTGGATGGGGAATAGAACAAATCGATGTGGGTT 311471 Score = 116 bits (128), Expect = 5e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 |||||||||||||| || ||||| |||||||| ||||| || | ||| || ||||| Sbjct 310837 AAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTT 310896 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 | |||||||| | ||| || ||||| ||||||||||| || || || ||||| ||| Sbjct 310897 AACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAG 310956 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAAC 39762 || || || || ||||| ||||| ||||| Sbjct 310957 AAAATACCCTCGACTGCAGCAAAGGCAAC 310985 >seq2115 Length=135315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC-ATATTGTATTATCTCTGTAC 69334 ||| || ||||| |||||||| |||| | | || ||| | || |||||||||| Sbjct 37798 AGAAGCGAGATTGCAAACTGCAGTTTCATCCGG-TGAGCTATACTCAATAATCTCTGTAC 37856 Query 69335 ATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGT 69394 | || |||||||| ||| || ||||||| || ||||| ||| |||| || || | Sbjct 37857 ACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTGGACTTCCTGTTGCAAGCAT 37916 Query 69395 CCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446 ||||||| || || || ||||| || ||||| ||||||| || || || || Sbjct 37917 CCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTGAGCCTCAATGATTGA 37968 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 |||| || ||||| ||||| ||||| ||| | ||| | |||| ||| | || || Sbjct 36947 AGATAGGGGTTAACGATTTGGAATTCACCACTGAGCACGCGGCGAGAGTAGACGTTGCTA 37006 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 || | ||||| | ||||||||| ||||||| ||||| || || |||||||||||||| Sbjct 37007 GTGAAAGGTTCAATAGATTCATTGTTTCCCAAGATTTGTGCTGTCGATGCAGTTGGCATT 37066 Query 68821 GGTGCCA 68827 || |||| Sbjct 37067 GGCGCCA 37073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686871466506720