Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq1097 720 0.0 seq1110 322 1e-83 >seq1097 Length=3195 Score = 720 bits (798), Expect = 0.0 Identities = 399/399 (100%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 32528 TACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 32587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 TACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 677 Query 32588 AACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCT 32647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 678 AACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCT 737 Query 32648 GACGCGGAATTACGGCGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 32707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 GACGCGGAATTACGGCGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 797 Query 32708 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTA 32767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 798 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTA 857 Query 32768 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 32827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 858 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 917 Query 32828 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCT 32887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCT 977 Query 32888 GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAA 32926 ||||||||||||||||||||||||||||||||||||||| Sbjct 978 GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAA 1016 Score = 508 bits (562), Expect = 1e-139 Identities = 296/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 24397 TACCCGGATATTATCGTGAGGATGCTTCATCGCCATTGCTCCCCAAATACAAAACCAATT 24456 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 24457 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 24516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 24517 ATGTAATTTTCATCCCGCTCAACCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGG 24576 ||||| ||||||| |||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 24577 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTTACCCACATGCTGTACTGCACCTGG 24636 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 24637 GCCATGTAAGCCGACTTTATGGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 24696 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 24697 GAGGTA 24702 |||||| Sbjct 614 GAGGTA 619 Score = 286 bits (316), Expect = 8e-73 Identities = 258/318 (81%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 22235 TTTTATGTGCTTTCTCTTCGAGCCACCTGACACACGCTTCCTCAAACGTCATATCAGGTA 22294 |||||| ||||| || || ||||| || | || || || ||||| || | |||||||| Sbjct 1 TTTTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTA 60 Query 22295 TTTCACCAAG-TTTGCTGACCCGCCATGCTTCAGCCTTTAGCTTGTCATGGAGCTCTGTC 22353 || || || ||| || || ||||| ||| || ||| ||||||| || | ||| Sbjct 61 AATCCCCTAGCTTTTCT-ACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGA 119 Query 22354 GCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCTTTTACCGTTCGGCAATGTG 22413 || |||| |||||||||||| |||||||| | |||| || ||| ||| ||| | | | Sbjct 120 GCTTGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCG 177 Query 22414 AA-AC-TGGCGTACCATATTTCACTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 22471 || || ||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 178 AATACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 237 Query 22472 GCCATCACCCGCGCTCACCTTGATAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGC 22531 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 238 GCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGC 297 Query 22532 TTGTCGCGTTGTGAGGTA 22549 ||| || ||||||||||| Sbjct 298 TTGCCGTGTTGTGAGGTA 315 >seq1110 Length=2318 Score = 322 bits (356), Expect = 1e-83 Identities = 310/397 (78%), Gaps = 23/397 (6%) Strand=Plus/Plus Query 36721 ATGAGTAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 36780 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 36781 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAA--- 36837 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 36838 GCCACA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACATGAT 36879 |||| | | | | || |||| ||||||| |||||| | |||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 36880 GTAGCTGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36938 || |||| ||||| || | |||||| |||||| | |||||||| || || || || || Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAAT-GA 1847 Query 36939 AAGTCTTCGTGCTGATGTTTCTGCTGGTCGTAAGTGGCTGCACGTCAAAGCAGTCTGTCC 36998 ||| |||| ||||||| | ||||||||| || ||||| ||||||||||||||| Sbjct 1848 TGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA 1907 Query 36999 GGACAAGCATAAAACCACCGCCGCCTCCGGCGTGGATGATGCTTCCAGCCCCAGACTTAC 37058 | || | || ||||| ||||||||||||||||| |||| || |||| |||| | Sbjct 1908 GTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGC 1967 Query 37059 TGACACCGCTCAACGGGATTATTTCGTTCTCAGAGAG 37095 ||||||||| |||||||||||||| ||||||||| Sbjct 1968 AGACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122716863494376