Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq1110 221 3e-53 >seq1110 Length=2318 Score = 221 bits (244), Expect = 3e-53 Identities = 221/288 (77%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 36731 GTCAGAGAGATTGAGGTATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCA 36790 |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 36791 TCATCGTCAGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAG 36850 |||||||| |||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 36851 AGCAGCGCGATAAA---GCCACA------------------TCCACAATCGCTGACATGC 36889 |||||||| ||| |||| | | |||| |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 36890 AGAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATG 36949 ||| |||||| |||||||| || | || || || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 36950 CTAACGC-GACTATCGAAAGCCTCCGTGCTGATGTTTCTGCTGGGCGT 36996 | || || || || || || |||| ||||||| | ||||| ||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123846405170304