Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1456 96.9 3e-15 >seq1456 Length=366961 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || || |||||||| || || || ||||| || |||||||| || || Sbjct 311309 GTGTTAGCCTTCTTTGCTGCAAGTGATGGAATAGTGCTAGAGAATTTGGTCGAGCGTTTC 311250 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 |||||||||||| | || || | || |||||||||||| | || || ||||| || Sbjct 311249 AGTCAAGAAGTTCAAGTTCCGGAGGTCCGGTGTTTTTATGGGATGCAGATCGCCATCGAG 311190 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || ||||| || ||||| |||||||| || || || ||||||||| Sbjct 311189 AACATACATTCAGAGATGTATTCACTTCTGATTGACACATATATCAAAGAT 311139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | || || || |||||||| || || || || || ||||||||| Sbjct 310985 GTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTCGCCGCAATATTTTGG 310926 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | || ||||| ||||||||||||||||| || || ||||| | || ||| | ||| Sbjct 310925 CTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAACTGATCAGTAGGGAT 310866 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || |||| ||||| || || |||||| Sbjct 310865 GAGGGTCTACACTGCGACTTCGCCTGCTTG 310836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397434938309740