Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1867 95.1 1e-14 seq2115 86.0 5e-12 >seq1867 Length=410790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || |||||||| || | || ||||||| | ||||| || Sbjct 292144 GTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCA 292203 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| || || || || || || || | || || ||||| ||||| |||| Sbjct 292204 GCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTC 292263 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || ||||| |||| ||||| ||||| || Sbjct 292264 ACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTC 292323 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 292324 TTCACAAAGATCTGCAT 292340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | || || |||||||| || ||||| ||| | Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| || ||||| ||||| |||| | |||||| || || || || Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||| |||| | || | || || | ||||||||| Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || |||||||| || ||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| ||| | || || |||||||| || ||||| ||| Sbjct 315235 TGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGG 315294 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || ||||||| || ||||| ||||| |||| | |||||| || || || | Sbjct 315295 ACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTG 315354 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| || | | || | || || | ||||||| Sbjct 315355 GGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAA 315414 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 |||| || || || | || || || || || ||||| || |||||||| ||| Sbjct 315415 CTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATTGCT 315467 >seq2115 Length=135315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||| || |||||| || ||||| | | ||| | |||||| ||||| ||| Sbjct 36956 TTAACGATTTGGAATTCACCACTGAGCACGCGGCGAGAGTAGACGTTGCTAGTGAAAGGT 37015 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCAT 130863 |||| ||||| ||||| || || ||||||||||| | ||| || ||||| Sbjct 37016 TCAATAGATTCATTGTTTCCCAAGATTTGTGCTGTCGATGCAGTTGGCAT 37065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424911882194976