Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1456 100 9e-16 >seq1456 Length=366961 Score = 100 bits (110), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| |||| || ||||||| ||||| || | || || |||||||| ||| | Sbjct 310994 GAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTC-GCCGC 310936 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 || || ||| ||||||| || || | |||| || | || || || || |||||||| Sbjct 310935 AATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAACTGAT 310876 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGT 443885 |||| |||| |||||| | || |||||||||||||| | || || |||| |||| || Sbjct 310875 CAGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTA---CAAATACATTGT 310819 Query 443886 GCACAAGC 443893 || |||| Sbjct 310818 TCAAAAGC 310811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588247515786860