Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1110 911 0.0 seq1097 511 2e-140 >seq1110 Length=2318 Score = 911 bits (1010), Expect = 0.0 Identities = 590/644 (92%), Gaps = 3/644 (0%) Strand=Plus/Plus Query 27771 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 27830 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 27831 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 27890 ||| | | |||||| || | |||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 27891 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 27950 ||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 27951 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 28010 | ||||||||||||||||||| || ||| ||||| || ||| | || | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT--CAGT-CAGTG 1914 Query 28011 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 28070 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 1974 Query 28071 GCTGAACGGGATTATTTCATCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 28130 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1975 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 2034 Query 28131 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 28190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2035 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 2094 Query 28191 CATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 28250 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2095 CATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 2154 Query 28251 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 28310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2155 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 2214 Query 28311 TGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 28370 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 CGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 2274 Query 28371 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 28414 |||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2275 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 511 bits (566), Expect = 2e-140 Identities = 297/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 4661 TACCCGGATATTATCGTGAGGATGCTTCATTACCATTGCTCCCCATATACAAAACCAATT 4720 ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 4721 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 4780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 4781 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGG 4840 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 4841 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 4900 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 4901 GCCATGTAAGCCGATTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 4960 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 4961 GAGGTA 4966 |||||| Sbjct 614 GAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184435276653864