Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2115 86.0 8e-12 >seq2115 Length=135315 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||| ||| | ||| | ||||||| ||||||| || |||||||||||||| || || Sbjct 36994 GTAGACGTTGCTAGTGAAAGGTTCAATAGATTCATTGTTTCCCAAGATTTGTGCTGTCGA 37053 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 || ||||||||||| |||| | ||||||||| || | ||| Sbjct 37054 TGCAGTTGGCATTGGCGCCAGAAGAAGACTGTTTCGTACACC 37095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC--TTATCTGTGTACTCTAAA 111289 ||||| ||| || || | ||||||||| || || |||||| | | || | |||| | | Sbjct 37789 AAGGGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGTGAGCTAT--ACTCAATA 37846 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || |||||||| | ||| || | || || |||| || || || || |||| || Sbjct 37847 ATCTCTGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTGGACTTCCTG 37906 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||||| ||||||||||| |||||| |||| || || || || |||| Sbjct 37907 TTGCAAGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTG 37953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627997866460800