Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2115 102 9e-17 >seq2115 Length=135315 Score = 102 bits (112), Expect = 9e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 |||| ||| |||| ||| |||| | ||||| || || | |||||||| || ||| Sbjct 42001 AGACGTACAACCTAATGTCGGAGAAATGGTTCACCCATGCTTCACCGACCCTGTTTAACA 41942 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 ||||| | || ||||| ||||| ||||||||||| | | ||||| || ||||| | Sbjct 41941 GTGGTACTACCAGACCGCAAATGTCCAGCTGTTTCCTGATCACAATGAAAGACGACAGTA 41882 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTA 19346 |||| || || || || || ||||| ||||| || |||||||||| | || |||| Sbjct 41881 TTGAAGGTATTTATGACACACTCAAAGAGTGTGCTATCATCTCCAAGAATGCGGGAGGTA 41822 Query 19347 TCGG 19350 |||| Sbjct 41821 TCGG 41818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548494987677120