Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1456 86.0 7e-12 seq1991 82.4 8e-11 >seq1456 Length=366961 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||||||||| || ||||||||||| ||||||||||| ||||| | ||| ||||| ||||| Sbjct 310520 ATAATCACCTACTCGCTTTTCAAAGAAGTTGGTCTTGCCTTCGAGCGAAATGTTTTCCAT 310579 Query 74522 CCAGTCGAAAGGGTT 74536 ||||||| ||||| Sbjct 310580 GAAGTCGAACGGGTT 310594 >seq1991 Length=231824 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118146 CATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTG 118205 |||| ||| | | |||||| ||| ||| || ||||| || || || || |||| Sbjct 165129 CATTGTCCATTATCTGTTTACTGGAGGCTTCGCGAACATTCAATAATTTTCCACGGAGTG 165188 Query 118206 GAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCG 118265 | || |||||| | |||||||| || || || | || || || | ||| | | ||| | Sbjct 165189 GGAATACGCCATAGTTGTCACGACCGACCACACCCAGACCAGCGACAGCCAAAGACTTGG 165248 Query 118266 CCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAAT 118325 | || || || || |||| ||||||||||||| || | | | || ||||| || Sbjct 165249 CTGAATCTCCTTCAGTAAGTATAAGAGTGCACTGATTGGAGTGTTTTGTGCCGGCGTTAT 165308 Query 118326 TAGCATCATCCAGCTTCGGAACGCC 118350 | |||||||| ||||| || | ||| Sbjct 165309 TTGCATCATCAAGCTTTGGTATGCC 165333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186258810400