Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq1110 870 0.0 seq1097 307 4e-79 >seq1110 Length=2318 Score = 870 bits (964), Expect = 0.0 Identities = 586/652 (90%), Gaps = 5/652 (1%) Strand=Plus/Plus Query 33617 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 33674 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 1670 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 1729 Query 33675 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 33734 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 1730 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATG 1789 Query 33735 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 33794 ||||||| || ||||| | |||| ||| ||| ||||| ||||||| |||||||||||| Sbjct 1790 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATG 1849 Query 33795 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 33854 |||| || | ||| |||||||||||| || | ||| ||||| || ||||| Sbjct 1850 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA-- 1907 Query 33855 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 33914 ||| ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 1908 GTCA-GTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 1966 Query 33915 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 33974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1967 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 2026 Query 33975 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 34034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2027 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 2086 Query 34035 GGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCC 34094 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2087 GGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCC 2146 Query 34095 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 34154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2147 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 2206 Query 34155 ATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 34214 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 ATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 2266 Query 34215 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 34266 |||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2267 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 307 bits (340), Expect = 4e-79 Identities = 232/273 (85%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 346 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 405 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226 ||||||||||||||| |||||||||| ||||||||| |||| ||| || | ||||||||| Sbjct 406 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 465 Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286 ||||||||||||||||||||| || || || |||||||| ||||||||||| | || Sbjct 466 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 525 Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346 || |||||||||||| | |||||||||||||||||||| | || || || || || || Sbjct 526 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACC 585 Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGT 14379 || |||||||| |||||||| || ||||| || Sbjct 586 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGT 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203285227090840