Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1867 141 6e-29 seq1332 125 4e-24 >seq1867 Length=410790 Score = 141 bits (156), Expect = 6e-29 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||||| || ||||| ||||| ||||| || || ||||| Sbjct 315018 AGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGA 315077 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| |||||||| || |||||||| ||||| || || | || || Sbjct 315078 CCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCT 315137 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| ||| || | || || | ||| || || | ||| || ||||| | || Sbjct 315138 TTGTCT-TGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCT-TCAACTTCAAGGG 315195 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||| | || |||||||| ||||||||| Sbjct 315196 TGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||||| || ||||| ||||| ||||| || || ||||| Sbjct 315246 AGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGA 315305 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| |||||||| || |||||||| ||||| || || | || ||| Sbjct 315306 CCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCC 315365 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| |||| ||| || || | ||| || ||||| | ||| Sbjct 315366 TTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCT-TCAACTTCAAGGGT 315424 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || || ||||| Sbjct 315425 GATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| ||||| || | ||| ||| || || ||||| ||||| || Sbjct 291202 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGAC 291261 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || |||||||| || || || || | || || ||||| || || Sbjct 291262 AAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291321 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||||| | ||| ||| | ||||||||| | ||| || Sbjct 291322 ATGCCTTCCTTATCTTGAATCTTC-GCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291380 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | ||| ||||||||||||||||| Sbjct 291381 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || ||||| || || || | ||| || ||||||| | |||||| || || || Sbjct 291466 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291525 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | || || ||||| || || | || ||||| ||| ||||| | ||| ||| | Sbjct 291526 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC-GCTTTCACGTT 291584 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| | ||| || || | ||| || || || || || | ||| ||||| Sbjct 291585 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291644 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 291645 AAAAATCTGCAT 291656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || ||||| || || || | ||| || ||||||| | |||||| || || || Sbjct 291694 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291753 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | || || ||||| || || | || ||||| ||| ||||| | ||| ||| | Sbjct 291754 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC-GCTTTCACGTT 291812 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| | ||| || || | ||| || || || || || | ||| ||||| Sbjct 291813 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291872 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 291873 AAAAATCTGCAT 291884 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || ||||| || || || | ||| || |||| || |||||||| || || || Sbjct 291922 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAA 291981 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | || || ||||| || || | || ||||| ||| ||||| | ||| ||| | Sbjct 291982 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC-GCTTTCACGTT 292040 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| | ||| || || | ||| || || || || || | ||| ||||| Sbjct 292041 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 292100 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 292101 AAAAATCTGCAT 292112 >seq1332 Length=523337 Score = 125 bits (138), Expect = 4e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | | ||| | ||||||||| |||||| |||||||||||||| ||||| || Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || ||||| || |||||||| || || || || Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||| ||| ||| || | ||||||| | || || || | || ||| | Sbjct 494109 ATGCCCTCCTTATCT-TGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGC-CTCGA 494166 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || ||||||| |||||| |||||||| |||||| Sbjct 494167 CCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712922085084