Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq1110 870 0.0 seq1097 307 4e-79 >seq1110 Length=2318 Score = 870 bits (964), Expect = 0.0 Identities = 586/652 (90%), Gaps = 5/652 (1%) Strand=Plus/Plus Query 34996 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 35053 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 1670 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 1729 Query 35054 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 35113 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 1730 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATG 1789 Query 35114 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 35173 ||||||| || ||||| | |||| ||| ||| ||||| ||||||| |||||||||||| Sbjct 1790 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATG 1849 Query 35174 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 35233 |||| || | ||| |||||||||||| || | ||| ||||| || ||||| Sbjct 1850 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA-- 1907 Query 35234 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 35293 ||| ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 1908 GTCA-GTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 1966 Query 35294 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 35353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1967 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 2026 Query 35354 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 35413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2027 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 2086 Query 35414 GGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCC 35473 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2087 GGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCC 2146 Query 35474 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 35533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2147 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 2206 Query 35534 ATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 35593 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 ATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 2266 Query 35594 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 35645 |||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2267 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 307 bits (340), Expect = 4e-79 Identities = 232/273 (85%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 14164 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14223 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 346 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 405 Query 14224 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14283 ||||||||||||||| |||||||||| ||||||||| |||| ||| || | ||||||||| Sbjct 406 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 465 Query 14284 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14343 ||||||||||||||||||||| || || || |||||||| ||||||||||| | || Sbjct 466 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 525 Query 14344 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14403 || |||||||||||| | |||||||||||||||||||| | || || || || || || Sbjct 526 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACC 585 Query 14404 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGT 14436 || |||||||| |||||||| || ||||| || Sbjct 586 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGT 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210920022492048