Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq1097 333 1e-86 >seq1097 Length=3195 Score = 333 bits (368), Expect = 1e-86 Identities = 238/274 (87%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 23874 TACTTCCCGCGACTTCATGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTA 23933 ||| ||||| || ||||||||||||||||| || || || || || || || | ||||| Sbjct 619 TACCTCCCGGGATTTCATGAAATTCCGGCTCGGTGGTTTCGAGGCAATAAAATCGGCTTA 560 Query 23934 CATGGCCCAGGTGCAATTCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAA 23993 ||||||||||||||| | |||||||||||| || || | ||||||||||| ||||| Sbjct 559 CATGGCCCAGGTGCAGTACAGCATGTGGGTGACGCGAAAAAATGCCTGGTACTTTGCCAA 500 Query 23994 CTACGACCCACGCATGAAGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAA 24053 ||| ||||| || |||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 499 CTATGACCCGCGTATGAAGCGTGAAGGCCTGCATTATGTCGTGATTGAGCGGAATGAAAA 440 Query 24054 GTACATGGCGAGTTTTGATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACT 24113 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 439 GTACATGGCGAGTTTTGACGAGATGGTGCCGGAGTTCATCGAAAAAATGGACGAGGCACT 380 Query 24114 GGCGGAAATTGGTTTTGTATTTGGAGAACAATGG 24147 ||| |||||||||||||||||||| || |||||| Sbjct 379 GGCTGAAATTGGTTTTGTATTTGGGGAGCAATGG 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195180321831672