Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq1097 327 5e-85 seq1110 253 8e-63 >seq1097 Length=3195 Score = 327 bits (362), Expect = 5e-85 Identities = 237/274 (86%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 346 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 405 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||| Sbjct 406 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 465 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| || ||||| |||||||| ||||||||||| | || Sbjct 466 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 525 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | || || || || || || Sbjct 526 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACC 585 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTA 11895 || |||||||| |||||||| || ||||| ||| Sbjct 586 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTA 619 >seq1110 Length=2318 Score = 253 bits (280), Expect = 8e-63 Identities = 222/274 (81%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || ||||| |||||| ||| ||| ||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 31876 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTG 31935 | ||||||||||||||||||| || ||| |||| || ||| | || | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG--TCAGT-CAGTG 1914 Query 31936 CGTGAAGCCACCGGCACCTCCGGCGTGGGCAATG 31969 |||||||||||| | |||||||||||| |||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATG 1948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200987748843536