Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq1110 333 7e-87 seq1097 316 5e-82 seq3218 219 1e-52 >seq1110 Length=2318 Score = 333 bits (368), Expect = 7e-87 Identities = 228/256 (89%), Gaps = 1/256 (0%) Strand=Plus/Plus Query 38885 TTGATGTCATGAGTCGGTTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCT 38944 ||||||| ||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 1602 TTGATGT-ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCT 1660 Query 38945 GTCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCG 39004 | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1661 GCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCG 1720 Query 39005 ATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCC 39064 | ||||| | ||| |||||||||| ||||| ||| | |||||||| |||||| ||| | Sbjct 1721 ACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTC 1780 Query 39065 AGCGTGATGCTGATGCACTTGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTG 39124 ||||||||| || ||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 1781 AGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTG 1840 Query 39125 AAAATGATGCTCTTCG 39140 ||||||||||||| || Sbjct 1841 AAAATGATGCTCTGCG 1856 >seq1097 Length=3195 Score = 316 bits (350), Expect = 5e-82 Identities = 258/313 (82%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 22144 TTGTCTGCTTTCTCTTCCAGCCAGCGGAGGCATGCTTCTTCAAAAGTCACTTCAGGAAAG 22203 || || ||||| || || ||||| | ||||| || ||||||||||| || ||||| || Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 22204 TCGCCTAGCCTGTCTACTCGCCAGAGTTCAGCCTTTCTTTTGTCGTGCAACTCCTGAGCT 22263 || |||||| | ||||||||||||||||| || |||| ||||||||||||||||||||| Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 22264 TGCCGCTTTCCCGCTGTCCCAAGAGATTCCTTAATTCGCTTCCCGCCCGGGAGCGAGTAC 22323 ||||| || || ||| |||||||||||||||||||| ||||||||||||||||| ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGAGCGAATAC 182 Query 22324 GAGGCGTACCATATTTCACCTCTACGGAAGATTGACATTTATTTCCCTCTTTAAATGCAT 22383 ||||| |||||||||||| ||| ||||||| |||||||| || ||||| | | ||| Sbjct 183 GAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCAT 242 Query 22384 CACCCGCGCTCACGTCGACAGTATGCAGCGGTGAATTGAGTGCCGCAATGCATGCTTGTC 22443 ||||||||||||| | ||||||||||||||| || | || ||||||||||| ||||| | Sbjct 243 CACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCC 302 Query 22444 TAGTGGTTAGGTA 22456 || || ||||| Sbjct 303 GTGTTGTGAGGTA 315 >seq3218 Length=1940 Score = 219 bits (242), Expect = 1e-52 Identities = 132/139 (95%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40036 CCCATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCG 40095 |||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| Sbjct 1940 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 1881 Query 40096 TGGCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGC 40155 |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1880 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 1821 Query 40156 TTTTCAGGACGGTTTTTCC 40174 ||||||||||||||||||| Sbjct 1820 TTTTCAGGACGGTTTTTCC 1802 Score = 219 bits (242), Expect = 1e-52 Identities = 132/139 (95%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 17411 CCCATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCG 17470 |||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| Sbjct 1940 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 1881 Query 17471 TGGCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGC 17530 |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1880 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 1821 Query 17531 TTTTCAGGACGGTTTTTCC 17549 ||||||||||||||||||| Sbjct 1820 TTTTCAGGACGGTTTTTCC 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132153176248800