Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq1097 199 1e-46 seq1110 131 4e-26 >seq1097 Length=3195 Score = 199 bits (220), Expect = 1e-46 Identities = 214/283 (76%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 25997 TGCGTCATCGCCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCT 26056 ||||||||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 336 TGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTT 395 Query 26057 TTTCGATAAATTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAA 26116 ||||||| || ||||| ||||| |||| || | |||||| || || | ||||||| Sbjct 396 TTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAA 455 Query 26117 CAACCACGTGGTGGATACCTTCTCGTTTCATGCGCGGGTCATAATTCGCGAAATACCATG 26176 || || | || | ||||| || ||||| ||||||||||| || || || ||||| | Sbjct 456 TCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGG 515 Query 26177 CATCTCTCCCGGTTACCCACATGCTGAATTGCACCTGGGCCATATAGGCGGATTTGATAG 26236 ||| | | | || |||||||||||| | |||||||||||||| || || ||||| || | Sbjct 516 CATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTG 575 Query 26237 CCTCGAAGCCGCCAAGCCTGAATTTCATAAAGTCGCGAGAGGT 26279 ||||||| || || |||| ||||||||| || || || ||||| Sbjct 576 CCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGT 618 Score = 174 bits (192), Expect = 4e-39 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 31773 TACCAGTATTGCCGCACGCGTGGTTTATACCCGGATGCAGAATCATATCCATGGGAATCC 31832 ||| |||||||||| | |||||| | || ||||||||||| || ||||| ||| |||| Sbjct 618 TACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 677 Query 31833 AAAGCCCATTACTGGCTTGTCACCACACTGTACTCAAACATGCGAGCTAACGCTCTTAGT 31892 || || ||||||||| | || |||| ||||| |||||||| || || || || | Sbjct 678 AACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCT 737 Query 31893 GATACCGAGTTGCGCCGCAAGGCAGTCGAAGAACTCAACCACATGGTTACCAGGATAAAC 31952 || | || || || |||||||| | ||| ||||| | | ||| | | || ||| Sbjct 738 GACGCGGAATTACGGCGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 797 Query 31953 CGTGGAGAGGTGATCCCGGAGCCAGTTAAGCAGCTTCCTGTTCTTGGTGGCAGACCACTA 32012 ||||| ||| ||| || || ||||| || || ||||||||| | || || ||||| ||| Sbjct 798 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTA 857 Query 32013 AACCGCGCGCAAAACCTCGCGAAGATTGCAGAAATTCGGGCCAAATTCGGACTAAAGGGA 32072 || || || || || |||||||| ||||||||| || || |||||||| || ||| Sbjct 858 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 917 Query 32073 G 32073 | Sbjct 918 G 918 >seq1110 Length=2318 Score = 131 bits (144), Expect = 4e-26 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 39837 AATCACTACCGCAATAACGCTATCACTTACAAGGACCAGCGCGACACCGCTACCCACAAG 39896 ||||| ||||| ||||||| || || ||||| | ||||||||||| | || | Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 39897 CTGACACTGGCGAACGCGACAATTACCGACATGACGAAGCGCCAGCGTGACATTGCCGCC 39956 |||| |||||||||||| ||||||| || ||| || ||| |||||||| |||| || Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 39957 CTCGATGCAAAATACACGAAGGAACTAGCTGATGC 39991 ||||||||||||||||||||||| |||||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 1832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130239675052752