Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1136 178 2e-40 >seq1136 Length=1633 Score = 178 bits (196), Expect = 2e-40 Identities = 411/616 (67%), Gaps = 20/616 (3%) Strand=Plus/Plus Query 13121 ACGCAGATGGTAATGCGGAAACCACGGTTAGAAACATTGCATTTAACTACATAGTGAGGC 13180 |||| | |||||| ||||||| ||| || | |||||| ||||||||||| || ||||||| Sbjct 203 ACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCATTTAACTATATTGTGAGGC 262 Query 13181 TGGCATAATGACTTTTAAAATGAGCAGCAAAGCGCAGACAATTAAAATTTTCAATCTGCG 13240 | |||||||| | || | |||||| || | | ||| || ||||||| ||||||| Sbjct 263 TTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCT 322 Query 13241 TTCAGATACTAACGAATTTATTGGTGCGGGCGATGCGTATATCCCGCCGCACACTGGATT 13300 | | ||||| ||||||||||||| || ||||| ||||| ||||| || || || | Sbjct 323 GGCCGGAACTAATGAATTTATTGGTGAAGGTGATGCATATATTCCGCCTCATACAGGTCT 382 Query 13301 ACCGGCTAATTGTACTGATGTCGCCCCTCCTGAAATTCCGACCAGCCATATTGCGATATT 13360 || || || |||| ||| | || || || || |||||| | || | || | || Sbjct 383 GCCAGCAAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTCGTGGCTGTTTT 442 Query 13361 TGA---TGCTGAAACACAGACGTGGACTCTGCATGAAGACCACAGAGGTAAAGCGGTTTA 13417 | || ||| || ||||| ||| |||||| || | |||||| ||||||| Sbjct 443 CAACAGTGATGAGTCA---TCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTA 499 Query 13418 TGACACAACAACCGGTAATCAGGTTTATATCTCCGAACCCGGCCCGTTGCCTGAAAATGT 13477 |||| | | || | | | | ||| || |||| ||| ||||| || |||||||| Sbjct 500 TGACGTGGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGT 559 Query 13478 CACATCAGTTTCGCCCGAGAGTCAATACCAGAAATGGGATGGTAAGGCATGGGTGAAAGA 13537 || | | ||||| || | | | ||||| ||| | || | || |||||||| || Sbjct 560 TACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGA 619 Query 13538 TGAAGTTGCGGAAGCTGCAGCA------CGACTTATTGAAGCGGAAGGGACAAAAAACAA 13591 | ||||||| | | | || | || ||||||| ||||||||||| Sbjct 620 ------TACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAA 673 Query 13592 CCTTCTGCAAAT-GGCTTTGACGAAAATAGCGCCATTACAGGATGCAGTTGAGCTTGATA 13650 ||| |||| | | | ||| | | || ||||| | |||||||| | || || || | Sbjct 674 CCTGATGCAGGTAGCCAGTGA-GCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAA 732 Query 13651 TCGCTACGAGTGAAGAGAGAGCGCAGCTCAACGAGTGGAAAAAATACAGGGTACTGGTAA 13710 | || ||| ||||| | || ||| | | |||||||| || ||||| || | | Sbjct 733 TTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGA 792 Query 13711 ACAGGGTGGATACATC 13726 || | || ||||| || Sbjct 793 ACCGTGTTGATACGTC 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95019093673320