Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq1136 167 5e-37 >seq1136 Length=1633 Score = 167 bits (184), Expect = 5e-37 Identities = 362/542 (67%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 14362 AATGACGTTTAAAATGAGTGAGCAGGCACAGACAATTAAAATTTATAATCTGCGTTCAGA 14421 |||| | || | ||||||||| || ||| ||| || |||||||||||||||| | | Sbjct 269 AATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCTGGCCGG 328 Query 14422 TACGAATGAATTTATTGGGGCAGGTGATGCGTATATACCGCCACACACGGGATTACCGGC 14481 || |||||||||||||| | ||||||||| ||||| ||||| || || || | || || Sbjct 329 AACTAATGAATTTATTGGTGAAGGTGATGCATATATTCCGCCTCATACAGGTCTGCCAGC 388 Query 14482 AAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCATATTGCGGTATTTGACGC 14541 |||| |||| ||||||||||| || |||||||| || | | || || || || Sbjct 389 AAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTCGTGGCTGTTTTCAACAG 448 Query 14542 TGAAACCGAAACGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGACACAAC 14601 ||| | ||||| ||| ||| || || || || | |||||||| ||| | Sbjct 449 TGATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGC 508 Query 14602 AACCGGCAATCAGGTTTATATCTCCGCTCCCGGCCCGCTACCTGAAAACGTCACATCAGT 14661 | || | | | | ||| || | | ||| ||| |||| ||||| || || | | Sbjct 509 GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTT 568 Query 14662 TTCACCTGATGGTGAATATCAGAAATGGGATGGTAAGACGTGGGTAAAAGACGAAGCGGC 14721 || || || || || | |||||| ||| | || | | ||||| || || | || Sbjct 569 ATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGC 628 Query 14722 TGAAACAGCGACCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCAAACAGC 14781 |||| | | | | | || || || |||| ||| |||| | || |||| ||| Sbjct 629 AGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGC 688 Query 14782 AGCGGAGAAAATCGCGCCGTTACAGGATGCTGTTGATCTTGGAATCGCAACAGATGATGA 14841 ||| | || |||||| | |||||||||| ||||| | ||| ||||| || || || Sbjct 689 CAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGA 748 Query 14842 GAAAGCGCAACTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTGGATACATC 14901 | || || || | |||||||| || |||| ||| | ||||| || ||||| || Sbjct 749 AATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTC 808 Query 14902 AA 14903 || Sbjct 809 AA 810 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13476 TCACGGTGGACGCAGACGGTAATGCGGAAACCACAGTTAAAAACATTGCATTTAACTATA 13535 |||| || |||| | ||||| ||||||| ||| || |||||||| ||||||||||||| Sbjct 194 TCACCGTTAACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCATTTAACTATA 253 Query 13536 TTGTGAGGCTGGCATGAT 13553 |||||||||| |||| || Sbjct 254 TTGTGAGGCTTGCATAAT 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107101669787496