Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq1110 870 0.0 seq1097 452 2e-122 >seq1110 Length=2318 Score = 870 bits (964), Expect = 0.0 Identities = 586/652 (90%), Gaps = 5/652 (1%) Strand=Plus/Plus Query 27076 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 27133 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 1670 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 1729 Query 27134 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 27193 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 1730 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATG 1789 Query 27194 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 27253 ||||||| || ||||| | |||| ||| ||| ||||| ||||||| |||||||||||| Sbjct 1790 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATG 1849 Query 27254 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 27313 |||| || | ||| |||||||||||| || | ||| ||||| || ||||| Sbjct 1850 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA-- 1907 Query 27314 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 27373 ||| ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 1908 GTCA-GTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 1966 Query 27374 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 27433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1967 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 2026 Query 27434 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 27493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2027 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 2086 Query 27494 GGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCC 27553 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2087 GGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCC 2146 Query 27554 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 27613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2147 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 2206 Query 27614 ATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 27673 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 ATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 2266 Query 27674 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 27725 |||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2267 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 452 bits (500), Expect = 2e-122 Identities = 288/313 (92%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 998 TTGTCGGCTTTTTCCTCAAGCCATCTCAGGCAGGCTTCTTCGAAAGTGACATCTGGCATA 1057 || || |||||||||||||||||||| |||||||| ||||| ||||||||||| || | | Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 1058 TCCCCCAGTCTGTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 1117 ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 1118 TGCCGCTTGTCCTTTGTGCCAAGAGACTCCTTAATTCGCTTCCCGCCCGGGAGCGAGTAC 1177 ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGAGCGAATAC 182 Query 1178 GAGGCGTACCATATTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCAT 1237 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 183 GAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCAT 242 Query 1238 CACCCGCGCTCACCTGGACAGTATGCAGCGGTGAATGAAGTGCTGCAATGCAGGCTTGCC 1297 ||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||| Sbjct 243 CACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCC 302 Query 1298 GGGTTGTGAGATA 1310 | |||||||| || Sbjct 303 GTGTTGTGAGGTA 315 Score = 430 bits (476), Expect = 5e-116 Identities = 262/278 (94%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 342 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 401 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| ||||||| |||||| | ||||| Sbjct 402 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGA 461 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || Sbjct 462 CATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTT 521 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| |||||||| ||||||| Sbjct 522 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGA 581 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTA 2055 |||||||||||||||||||||||||||||||||||||| Sbjct 582 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194668348267512