Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1867 105 5e-18 seq1332 87.8 1e-12 >seq1867 Length=410790 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| || ||||||||||| || || |||| || ||| | Sbjct 315464 AATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAG 315405 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || || || || ||||| ||||| | || || Sbjct 315404 CGATACCATTGAGAAT--GTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGAC 315347 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||||||||| |||||| | || |||| || | ||||||||||| Sbjct 315346 CAGCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTAC 315287 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| |||| | ||| |||| | ||| ||||||| ||| Sbjct 315286 AACATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGGC 315236 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||| || ||| || | || ||||| || Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | || ||| || || || || ||||| | || | Sbjct 291368 GAC-----ACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTG 291314 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| || || |||||| | || |||| || | ||||| |||| Sbjct 291313 ACCAGCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATT 291254 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| |||||| |||||||| ||||||||||| | ||||| || Sbjct 291253 ACAACATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGG 291202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || ||||| || || ||||||||||| |||||| | || Sbjct 315142 GACAAAGAAGGCATCCCACCTGACCAGCAGCGTTTGATTTTTGCCGGCAAACAACTTGAA 315083 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | ||||||||||||||||||||||||| |||| | ||| |||| | Sbjct 315082 GACGGTCGAACTCTGTCCGATTACAACATCCAAAAAGAATCCACTCTCCATCTGGTGCTT 315023 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 315022 CGTCTACGCGGTGG 315009 >seq1332 Length=523337 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || ||| || | || ||||| | Sbjct 494215 ATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGT 494156 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || ||| || || || || || || |||| || | Sbjct 494155 GATACGATCGAGAAC--GTTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATC 494098 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || |||||||| || || || ||||| |||| |||| | || ||||||| Sbjct 494097 AGCAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACA 494038 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || |||| | |||||||| | |||||||||||||| Sbjct 494037 ACATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGG 493989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355843542406596