Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1332 158 3e-33 seq1873 156 1e-32 seq1867 156 1e-32 >seq1332 Length=523337 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||| || || ||||||||||| || || | ||| || | ||||||| Sbjct 494460 AGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCT 494519 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| ||||| || | ||| || || ||||| |||| |||||||| || Sbjct 494520 TCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCT 494579 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || |||||||| ||| |||||||||||||| || ||| Sbjct 494580 TGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTC 494639 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| || || | |||||| Sbjct 494640 TTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || |||||||| || || ||||||||||||||||| || || | || || Sbjct 494223 CGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTG 494282 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||||| ||||| ||||| || || || ||||||||||| || |||| ||| Sbjct 494283 CGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCT 494342 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| || || || || ||||||||||| ||| ||| || || | | Sbjct 494343 TCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAA 494402 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || || || | |||||| Sbjct 494403 GTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| || ||||| ||||| ||||| | || || | || ||||||| |||| Sbjct 494013 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 494072 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 |||||||| || || | || || || || ||||||| || ||||| || || ||||| Sbjct 494073 TTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTTA 494132 Query 211032 TGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| || ||| ||| || ||||| |||||||| |||||||| || Sbjct 494133 GCTTTAACGTTCTCGATCGTATCACTAGC-CTCGACCTCCAGAGTGATAGTCTTTCCGGT 494191 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 494192 TAGCGTTTTAACAAAAATTTGCAT 494215 >seq1873 Length=396352 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || || || || | ||||| ||||| || ||||| ||||| | ||| || | Sbjct 292706 AGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 292647 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || ||||| ||||| || ||||| || | |||||||| || ||||| | |||||| Sbjct 292646 CCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATCCCTTCC 292587 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| ||| || ||||||||||| || || ||||||||| || || Sbjct 292586 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCAAGCGTA 292527 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||||||||| ||||| || || | |||||| || Sbjct 292526 ATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 >seq1867 Length=410790 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || ||||| |||||||| || || | | || Sbjct 291436 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291495 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || ||||| ||||| ||||||||||| |||||||| || | ||| Sbjct 291496 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 291555 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| ||||||||| || || |||||| | || |||||||| Sbjct 291556 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 291615 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 291616 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || ||||| |||||||| || || | | || Sbjct 291664 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291723 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || ||||| ||||| ||||||||||| |||||||| || | ||| Sbjct 291724 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 291783 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| ||||||||| || || |||||| | || |||||||| Sbjct 291784 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 291843 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 291844 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || ||||| |||||||| || || | | || Sbjct 291892 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291951 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || || || ||||| ||||| ||||||||||| |||||||| || | ||| Sbjct 291952 CGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 292011 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| ||||||||| || || |||||| | || |||||||| Sbjct 292012 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 292071 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 292072 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || ||||| |||||||| || || | | || Sbjct 292120 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 292179 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || ||||| ||||| ||||||||||| |||||||| || | ||| Sbjct 292180 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 292239 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| ||||||||| || || ||||| ||| || ||||| || Sbjct 292240 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGC-CTCGACCTCAAG 292298 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || || ||||| ||||| | |||||| Sbjct 292299 AGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||| | ||| |||||||| |||||||| ||||| | | || Sbjct 291207 ACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGT 291266 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || || ||||| ||||| ||||||||||| |||||||| || | || Sbjct 291267 ACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCC 291326 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || ||||| ||||||||| || || |||||| | || |||||||| Sbjct 291327 TTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAG 291386 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 291387 GGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || |||||||| |||||||||||||| ||||| | || || | || ||| Sbjct 315024 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315083 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || || || | || || |||||||| || | ||||| ||||| Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| ||||| || || ||||| || ||| |||||| || || |||||| Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATC---GCTTGCTTCAACTTCAAGGGTGATC 315200 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 315201 GTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || |||||||| |||||||||||||| ||||| | || || | || ||| Sbjct 315252 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315311 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || || || | || || |||||||| || | ||||||||||| Sbjct 315312 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 315371 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| || || || || ||||| || ||| |||||| || || ||||| Sbjct 315372 TGAATCTTCGCCTTTACATTCTCAATGGTATC---GCTTGCTTCAACTTCAAGGGTGATG 315428 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || ||||| || || | |||||| Sbjct 315429 GTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159087425091020