Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1332 113 4e-20 seq1867 107 2e-18 >seq1332 Length=523337 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || | ||||||||| || ||| || ||||| || || ||||| | || || || Sbjct 493998 AAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 494057 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 |||| || | ||| ||||| ||||| || | ||||||||| || | || | || ||| Sbjct 494058 CCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 494117 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGT-CGCCACCGTATCGCTCGACTCCACGTCCACCGT 39245 || || ||| | | | || | ||| | | | |||||| || | ||| || |||| || Sbjct 494118 TTATCT-TGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGT 494176 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | ||||| || |||||||||||||| |||||||| Sbjct 494177 GATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq1867 Length=410790 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||||||| || || ||||||| || ||||| |||| || Sbjct 315026 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTC 315085 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| |||||||| ||||| || | |||||||||||| |||||| | || |||||||| Sbjct 315086 AAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG-ATGCCTTCTTTGTCTT 315144 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || | || | | |||||||| | || || || | ||||| | | Sbjct 315145 GAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCT 315204 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || ||||| || ||||| Sbjct 315205 TACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||||||| || || ||||||| || ||||| |||| || Sbjct 315254 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTC 315313 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| |||||||| ||||| || | |||||||||||| |||||| | || || ||||| Sbjct 315314 AAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTT 315372 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || | || | | |||||||| | || || || | ||||| | | Sbjct 315373 GAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCT 315432 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || || |||||||| Sbjct 315433 TCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429522837841724