Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1332 138 3e-27 seq1867 127 5e-24 seq1873 123 6e-23 seq1055 107 5e-18 >seq1332 Length=523337 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || ||||||||||| || || |||||||||| ||||| || | | ||| Sbjct 494223 CGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTG 494282 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | |||||||| || || || || |||||||||||||| ||||| ||| Sbjct 494283 CGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCT 494342 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || || || || ||| ||| ||||||||| || | ||| || || || Sbjct 494343 TCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAA 494402 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||| ||||| | ||| | ||||| Sbjct 494403 GTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 494460 AGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCT 494519 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||||||| || || ||||| || | || || || || || ||||| |||||||| ||| Sbjct 494520 TCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCT 494579 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| |||||||| || | || || || | || || ||| Sbjct 494580 TGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTC 494639 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 494640 TTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1867 Length=410790 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||||||||||| |||||||||| || ||||| || ||| Sbjct 315024 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315083 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | || || ||||| || || || ||||| |||||| Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || ||||| || | ||| || || | ||||||||| Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 315203 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 315204 TTACCGGTCA 315213 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||||||||||| |||||||||| || ||||| || ||| Sbjct 315252 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315311 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | || || ||||| || || || |||||||||||| Sbjct 315312 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 315371 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||| || | ||| || || | ||||| ||| Sbjct 315372 TGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTC 315431 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | ||| | ||||||| Sbjct 315432 TTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 >seq1873 Length=396352 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| ||| || || || | ||||||||||| || | |||||||| | | ||| | Sbjct 292706 AGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 292647 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| || ||||| || | ||||||||| || || || || |||||| Sbjct 292646 CCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATCCCTTCC 292587 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| || ||| ||||||||| || || | ||| || || | ||| Sbjct 292586 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCAAGCGTA 292527 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| ||||| | || || | ||| | ||||| || Sbjct 292526 ATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 >seq1055 Length=5557 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 4225 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 4284 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | || ||||| Sbjct 4285 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCG 4344 Query 7856 TTAGCT 7861 |||||| Sbjct 4345 TTAGCT 4350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192464765577512