Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1456 120 3e-22 >seq1456 Length=366961 Score = 120 bits (132), Expect = 3e-22 Identities = 222/326 (68%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||||| ||||| || || || |||||| || |||||||| || || || Sbjct 311136 TGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGAT 311195 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 || ||||| | || ||||| || | | || | ||||||||||| | || || | Sbjct 311196 GGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACG 311255 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 || || || || || ||||| || ||||| || ||||| || || || |||| || Sbjct 311256 CTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGA 311315 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 || |||| ||||| | ||| || | ||||||| ||||| || | | ||| Sbjct 311316 GATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATC 311375 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGG 5107 || || ||||| ||||||||||| || | ||||| || || | ||||| ||| | Sbjct 311376 GACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTG 311435 Query 5108 ATACTGAATCGGAAGTATGACAAATC 5133 || || || || | || ||||||| Sbjct 311436 GTATTGGATGGGGAATAGAACAAATC 311461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 211/316 (67%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 ||||| || | ||||| || || | | ||| | | |||||| || ||||| || ||| Sbjct 310672 CGGTCCGCGATGAATTCGATGTAGCGACACATCAACTTGCAGTTCATACCAATCAAACTC 310731 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 || || | || | | | ||||| ||||||||| ||| || || | || || | Sbjct 310732 ACTGGCAAAGCATCCGAAAGAAACTTTTGTTCTATTTCTACCGCCTCCTTAATGATGGCA 310791 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | ||| || | || || | || | |||| ||| || || || || || Sbjct 310792 AGCACACGATCCTTTGCAGGCTTTTGAACAATGTATTTGTACAGCAAGCAGGCGAAGTCG 310851 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 || || | ||| || || || || |||||||| || || ||||| || ||||| ||| Sbjct 310852 CAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTTAACCCAGGCATCAAA 310911 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 || | ||||| ||||||||||| ||||| || ||||| ||||| || || || || Sbjct 310912 CCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATACCCTCGACT 310971 Query 4680 GCGGCAAACGCTACTA 4695 || ||||| || |||| Sbjct 310972 GCAGCAAAGGCAACTA 310987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427026970107884