Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq1097 239 1e-58 seq1110 150 5e-32 >seq1097 Length=3195 Score = 239 bits (264), Expect = 1e-58 Identities = 244/315 (77%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 31659 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTCAAAAGTCATGTCAGGCGTC 31718 |||| || || ||||| | ||| || | |||||| | |||||||| | ||||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 31719 TCTCCTAATTTACTTACCCTCCATGCTTCTGCCTTCAGCTTGTCATGAAGCTCTGTGGCC 31778 || |||| || ||| | ||| |||||| || ||||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 31779 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTTCGGCAATGTGAA- 31837 |||| |||||||||||| |||||||| | ||||| || ||| ||| ||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 31838 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGTC 31896 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||| | Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 31897 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAGTGCCGCAATGCAGGCTTG 31956 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 31957 TCGTGTGGTGAGGTA 31971 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 >seq1110 Length=2318 Score = 150 bits (166), Expect = 5e-32 Identities = 176/237 (74%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 1643 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 1702 Query 6760 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 6798 ||||||||| |||||||| ||| |||| | | || | || Sbjct 1703 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 1762 Query 6799 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 6858 |||| ||||||| |||||| || ||||| || | |||||||| | |||||| |||||| Sbjct 1763 CTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGT 1822 Query 6859 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 6914 | |||||||| || || || || || |||| || | ||||||| | ||||| ||| Sbjct 1823 TAGCTGATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133660298428296