Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1456 136 5e-27 seq2115 87.8 2e-12 >seq1456 Length=366961 Score = 136 bits (150), Expect = 5e-27 Identities = 230/333 (69%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | || || || || | ||| |||||| || || || || || || || || Sbjct 311139 ATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGC 311198 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 ||||| | || |||||||| | | || | | || || || || || || || Sbjct 311199 GATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTC 311258 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 |||||||||| |||||||||||||| |||||||| || ||||| |||| | || Sbjct 311259 GACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGAT 311318 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 || | |||| | | || ||||||||||| | | ||| || || | ||| || Sbjct 311319 GAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGAC 311378 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTA 48700 || ||| | |||||||| ||||| ||||||| ||||| | | ||| | ||| ||| Sbjct 311379 CTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 311438 Query 48701 TTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 |||||| ||||| | |||||||| || ||| || Sbjct 311439 TTGGATGGGGAATAGAACAAATCGATGTGGGTT 311471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || || || || || ||||| ||||| ||||| || | ||| || ||||| Sbjct 310837 AAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTT 310896 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| | || |||||||| |||||||||||||| ||||| ||||| ||| Sbjct 310897 AACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAG 310956 Query 48258 AATATGCCTTCTACGGCCGCAAATGC 48283 || || || || || || ||||| || Sbjct 310957 AAAATACCCTCGACTGCAGCAAAGGC 310982 >seq2115 Length=135315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 258/392 (66%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||| || |||||||| || | ||| || | || | || | ||| | | Sbjct 36684 TCCACGCGTAAAAGTGCATGCTAGTAATTTTTCCGTAGTTGGGCTGAGCAACATGTAAGT 36743 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | || |||||||| ||||| |||| |||| ||||||||||| | || || | Sbjct 36744 TGAGTGATTGACTTTGGTCGATAAAAGGCCCTCGGTCAGCCGCCATGTCGATTATCTTGC 36803 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT-TTGTA 77027 |||| || |||||| || |||||| | | || || || || |||| | ||| | Sbjct 36804 GCTGAGAAAGTTCCCATATGGTTTTGTAGAGAGCCTTTATTTCGTCAGGAATGCCTTGAA 36863 Query 77028 TTT--TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATT 77085 | | |||| ||||| | || | ||| | ||| | || || ||| ||| Sbjct 36864 TATCCTGAACAGAACCTTGGTTTGCCACAATCGCGGACTTGAGTTCTTCGGACCATAAT- 36922 Query 77086 TCCTC-TCTGTTAAAACTCTA-AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAA 77143 ||| | |||| | | | |||| || ||||| ||||| ||||| ||| | Sbjct 36923 -CCTAATTTGTTGAGGTCATCCATCAGATAGGGGTTAACGATTTGGAATTCACCACTGAG 36981 Query 77144 TACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAAT 77203 || | |||| ||| | || || || | ||||| | |||||||||||||||||| || Sbjct 36982 CACGCGGCGAGAGTAGACGTTGCTAGTGAAAGGTTCAATAGATTCATTGTTTCCCAAGAT 37041 Query 77204 TTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 ||| || || || ||||||||||| || |||| Sbjct 37042 TTGTGCTGTCGATGCAGTTGGCATTGGCGCCA 37073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694631044750720