Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1456 150 3e-31 seq2115 96.9 5e-15 >seq1456 Length=366961 Score = 150 bits (166), Expect = 3e-31 Identities = 233/333 (70%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | |||||| || || | ||| |||||| |||||||| ||||| || || || Sbjct 311139 ATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGC 311198 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| | || |||||||| | | || | || || || ||| || || || || Sbjct 311199 GATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTC 311258 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||||||||| ||||||||||||||| |||||||| || || || |||| | || Sbjct 311259 GACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGAT 311318 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | ||| || | || ||||||||||| | | ||| || || | ||| || Sbjct 311319 GAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGAC 311378 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 || ||| | ||||| || || || ||||||| ||||| | | ||| | ||| | || Sbjct 311379 CTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 311438 Query 47190 TTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 |||||| || || | |||||||| || ||| || Sbjct 311439 TTGGATGGGGAATAGAACAAATCGATGTGGGTT 311471 >seq2115 Length=135315 Score = 96.9 bits (106), Expect = 5e-15 Identities = 193/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| || ||||| |||| ||||| |||||||| | ||| ||| | | | Sbjct 40228 TCAAATTCCTCACCCCACTTATCAGGTAAACCTGGACATTCGTGTGGATCCATGAGCGTC 40287 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || ||| ||| || ||| ||| |||| ||| |||||||| || ||| || Sbjct 40288 CAATCCTCATTGGCCTCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGCATAGAAC 40347 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||||| | | |||||| || ||||| ||| | || | ||||| | Sbjct 40348 AAGTCTCGACCACGAATTTCTTCGGCACCAGTATTTTTTCGCATTTCAATGAACTGAAGG 40407 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | |||||| ||||| || || | || | | |||| || |||||||| || || Sbjct 40408 ACGTCCGGATGCCACGGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCGCCT 40467 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 || || || || | |||||||||||| | || | |||||| |||| Sbjct 40468 TGGTCGATGTAGCGAGCAGTGTTATTAAACACACGCAACATGGGAA 40513 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 ||| || ||||| || | || ||||| | |||||| ||| | ||||||||| || || Sbjct 41817 GCCGATACCTCCCGCATTCTTGGAGATGATAGCACACTCTTTGAGTGTGTCATAAATACC 41876 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 || ||||| || || |||| | | || |||||||| |||||||| | ||| Sbjct 41877 TTCAATACTGTCGTCTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTGGTAGT 41936 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 || ||||||| || || || ||||| ||||||||||| || || | ||| ||||| Sbjct 41937 ACCACTGTTAAACAGGGTCGGTGAAGCATGGGTGAACCATTTCTCCGACATTAGGTTGTA 41996 Query 77056 TGT 77058 || Sbjct 41997 CGT 41999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712895652015360