Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1110 206 7e-49 >seq1110 Length=2318 Score = 206 bits (228), Expect = 7e-49 Identities = 740/1140 (65%), Gaps = 23/1140 (2%) Strand=Plus/Plus Query 9316 CAGAGCAAAAGCTGGCGATGGTTCGCGAGAGCCTTGAGCCAGGACACAGCGTTTCGGTGG 9375 || || ||||| | || || |||| ||||| |||| || || | || || | | Sbjct 395 CACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCG 454 Query 9376 TGGCCCGGCGCAACGGCGTCAATGCCAATCAACTATTTCACTGGCGCAAGCTTTACCAGG 9435 | ||||||| | || || |||| || |||||| |||||| |||| ||||||| Sbjct 455 TTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGG 514 Query 9436 ACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGCCGTGGTGCCTGCGTCCGAGTTGAGCG 9495 | |||||| | | || ||| |||||| ||| || || ||||| || || | | Sbjct 515 AAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTG 574 Query 9496 ATGCGCTCAGGCAGATTCGTGAGCTACAACGGATGCTGGGCAAGAAGACGATGGAAGCCG 9555 || | | ||||||| || || || || |||| |||||||| ||||||||| | Sbjct 575 CCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATG 634 Query 9556 AAGTCCTCAAAGAGGCCGTGGAGATA-GCCCGCTCGCGAAAATGGATTGCGCACTCACCC 9614 || |||||||||| ||||| || ||| | || | ||| ||||| |||||| | ||| Sbjct 635 AACTCCTCAAAGAAGCCGTTGA-ATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC 693 Query 9615 TTGTTGCCGGGGGACGGTCAGTGAAACTGGTCAGTGAATGTCTCGGTGTGGCGCGCTCGC 9674 || ||||| ||||| || ||| | | ||||| |||||| | ||| |||| ||| Sbjct 694 TTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGC 753 Query 9675 AATTAACGGTTCGACTCAAACAATCGGTATCGCCCAAAATACGGCGGC-GCAGGC----C 9729 | || || |||| || | | | || | | | ||| || |||| | | Sbjct 754 AGTTGCACGTCATTCTCAGACGAACCG-ATGACTGGATGGATGGCCGCCGCAGTCGTCAC 812 Query 9730 GATGAACGATACGGAGCT-CGTCGCTGAAATCCAGCAACAAGTCAGCGAACTGCCCAGCT 9788 ||| |||||||| | | || | | | | || || || | || ||||| | | Sbjct 813 ACTGAT-GATACGGATGTGCTTCTCCGTA-TACACCATGTTATCGGAGAGCTGCCAACGT 870 Query 9789 ACGGTTACCGCCGTGTTTGGGGATTGCTGCGCCGCGCGCGCGAAAAGCAGTCGCTGCCCG 9848 | ||||| || || || |||| |||| ||| | | ||| | |||| | Sbjct 871 ATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTG 930 Query 9849 CGATCAACGTAAAACGGGTTTACCGAGTCATGCGTGATCACAACCTGCTGCTTGAGCGGC 9908 ||||||| | ||||| |||||||| ||||||| | | ||| |||||||||| Sbjct 931 CGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAA 990 Query 9909 G-CATCAAGCAGC-CCGGCGTACCGCGCCGGCATGAAGGCCGTATCGCCGTTAACACCAG 9966 | | | | | || || | || || ||| |||| | | ||||| || || Sbjct 991 AACCTGCTGTACCGCCATCGAAACGGGCA--CATACAGGCAGAGTGGCCGTGAAAGAAAG 1048 Query 9967 CGACACGCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAG 10026 | | ||| |||||||| || || ||||| ||| |||| || |||| | || |||| | Sbjct 1049 CAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCG 1108 Query 10027 CGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGAC 10086 || || || || ||||||||||||||||| || || | ||||| || || | Sbjct 1109 TGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGG 1168 Query 10087 CGGCTACAGCGGCGATGACA-TACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTG 10145 ||||| || | | || ||| ||| ||| | ||||||| | ||||| || || | Sbjct 1169 CGGCTTCAACAGTGA-AACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCG 1227 Query 10146 GCGACCTACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCG 10205 || || || ||| | | || ||| | ||||| | ||||| ||||| |||| | Sbjct 1228 GCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGG 1287 Query 10206 CTGAACAGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTAC 10265 || | | || |||| ||| || || | | || || | || || |||| |||| | Sbjct 1288 CTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGC 1347 Query 10266 GCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACG 10325 | || ||| |||| ||||| || |||||||||||||| || || || ||||| |||||| Sbjct 1348 GGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACA 1407 Query 10326 TGGCGCACATGCCCAAGCCGGATCG---AGAGACAGCCTTGCGCAACCTGACGATTGCCT 10382 | ||||||||| || || | | | |||| | ||||| | || | Sbjct 1408 TCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAG---AACCTTGCAGAGGCGT 1464 Query 10383 TCGAGCATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAAT 10442 |||||||||| ||||| ||||||||| || || || || |||||||| |||||| Sbjct 1465 TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAT 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138357655879464