Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1867 125 2e-23 seq1873 116 9e-21 seq1332 107 4e-18 >seq1867 Length=410790 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| ||||| ||||| ||||||||||| || | || || | || ||| Sbjct 292129 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 292188 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| ||||| | |||||||| | | ||| |||||||| ||| Sbjct 292189 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 292248 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| || |||| | |||| | ||| || |||||||| ||||| Sbjct 292249 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTC 292308 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 292309 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 125 bits (138), Expect = 2e-23 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || |||||||||||||||||||||| | ||||| || ||| Sbjct 315252 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315311 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || | | ||||||||| | | ||| |||||||| ||| Sbjct 315312 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 315371 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||| |||| | | | || || || || |||||||| || || Sbjct 315372 TGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTG--CT-TCAACTTCAAGGGTGATG 315428 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||||||||| | |||||| Sbjct 315429 GTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||||||||| |||||||||||||| | ||||| | || || |||| Sbjct 291222 CAAG-TGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCCTCTA 291280 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| ||||| | |||||||| | | ||| |||||||| ||||||| Sbjct 291281 GTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAA 291340 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||| || |||| | |||| ||| ||| || || || || ||||| | Sbjct 291341 TCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATAGTCT 291397 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| || | |||||| Sbjct 291398 TGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 118 bits (130), Expect = 2e-21 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || |||||||||||||||||||||| | ||||| || ||| Sbjct 315024 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315083 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || | | ||||||||| | | ||| ||||| || ||| Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||| |||| | | | || || || || |||||||| || || Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTG--CT-TCAACTTCAAGGGTGATC 315200 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || | |||||| Sbjct 315201 GTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| ||||| ||||| ||||||||||| || | || || | || || Sbjct 291901 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCC 291960 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || ||||| ||||| | |||||||| | | ||| |||||||| ||| Sbjct 291961 TCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 292020 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || ||| || |||| | |||| ||| ||| || || || || ||| Sbjct 292021 TGAATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATA 292077 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| || | |||||| Sbjct 292078 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| ||||| ||||| ||||||||||| || | || || | || ||| Sbjct 291445 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 291504 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| ||||| | |||||||| | | ||| |||||||| ||| Sbjct 291505 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291564 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || ||| || |||| | |||| ||| ||| || || || || ||| Sbjct 291565 TGAATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATA 291621 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| || | |||||| Sbjct 291622 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| ||||| ||||| ||||||||||| || | || || | || ||| Sbjct 291673 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 291732 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| ||||| | |||||||| | | ||| |||||||| ||| Sbjct 291733 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291792 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || ||| || |||| | |||| ||| ||| || || || || ||| Sbjct 291793 TGAATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATA 291849 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| || | |||||| Sbjct 291850 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 >seq1873 Length=396352 Score = 116 bits (128), Expect = 9e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||||| || || ||||| | || || ||||| || ||||||||||| | | ||| Sbjct 292710 CCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGT 292651 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | || || || || ||||| || ||||| || | | || || || | | ||| Sbjct 292650 ACGGCCGTCCTCCAGTTGCTTT--CCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATC 292593 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| |||||||| || ||||||| | || | | | || || || || ||| Sbjct 292592 CCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCA 292533 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || |||||||| ||||| ||||||| |||||| || Sbjct 292532 AGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 >seq1332 Length=523337 Score = 107 bits (118), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || |||||||| || || |||||||||||||| || | | ||| | ||||| Sbjct 494459 GAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATC 494518 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 |||||| ||| || ||||| || | | |||||| || | | || |||||||| || Sbjct 494519 TTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATC 494578 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 |||||| || || ||| |||| | | | || ||| ||| || || ||||| || Sbjct 494579 TTGAATCTTAGCCTTCACATTCTCGATGGTATC---ACTCGCCTCAACCTCGAGAGTTAT 494635 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||||||||| | |||||| Sbjct 494636 GGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| || || ||||||||||||||||||||||| || | | ||| | Sbjct 494226 AGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGT 494285 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||||| || || || || | || ||||| | | || |||||| Sbjct 494286 CCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCC 494345 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGA 152063 || || |||||||| |||||| | || | | | || ||| || ||||| | | Sbjct 494346 TTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGA---TTCGACTTCCAAA 494402 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || | || || ||||| | |||||| Sbjct 494403 GTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153756522085508