Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq1097 230 6e-56 >seq1097 Length=3195 Score = 230 bits (254), Expect = 6e-56 Identities = 242/315 (77%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 23443 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCATGCCAGGCGTC 23502 |||| || || ||||| | ||| || | |||||||| |||||||| | |||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 23503 TCTCCTAATTTATTTACCCTCCATGCTTCGGCCTTCAGCTTGTCATGAAGCTCTGTGGCC 23562 || |||| || | ||| | ||| ||| || || ||||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 23563 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTTCGGCAATGTGAA- 23621 |||| |||||||||||| |||||||| | ||||| || ||| ||| ||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 23622 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGTC 23680 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||| | Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 23681 ATCACCCGCGCTCACTTGGACAGTATGCAGCGGAGATTGAAGTGCCGCAACGCAGGCTTG 23740 ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 23741 TCGTGTGGTGAGGTA 23755 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129289324124280