Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1867 181 2e-40 seq1873 174 3e-38 seq1332 161 2e-34 >seq1867 Length=410790 Score = 181 bits (200), Expect = 2e-40 Identities = 184/240 (77%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 282860 AATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGAT 282919 |||||| | ||||||| || || ||||| |||||||| | ||| |||||||||||| Sbjct 314996 AATAAATGATTAACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGAT 315055 Query 282920 GTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTG 282979 |||||| || | || || || || || || |||||||| |||||||| |||||||| || Sbjct 315056 GTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTG 315115 Query 282980 TTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 |||||| || || || || |||||||| ||||| || || || | || || || || Sbjct 315116 CTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATC 315175 Query 283040 CGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || |||||||||||||| |||| ||||| || ||||||||||| Sbjct 315176 GCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||||||||||||||| || | Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| |||||||| || |||||| || Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| || ||||| | || || || || ||||| ||| Sbjct 315357 ATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACT 315416 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | ||||| |||||||| |||||| Sbjct 315417 TCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || | || |||||| |||||||||||||||| Sbjct 291885 ACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 291944 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || |||||||||||||| || || || || | ||||| |||||| || Sbjct 291945 CAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 292004 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||||| ||| | || || ||||| || ||||| Sbjct 292005 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 292064 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 292065 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| ||||| | |||| || || || ||||| ||||||||||| |||| Sbjct 291200 AACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAG 291259 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || || || |||||||||||||| || || || || | ||||| |||||| | Sbjct 291260 ACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTG 291319 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||| ||||| ||||| ||||| ||| | || || ||||| || |||| Sbjct 291320 GGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGA 291379 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 291380 CCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || | || |||||| |||||||||||||||| Sbjct 292113 ACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 292172 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || || || | |||||| || || || || | ||||| |||||| || Sbjct 292173 CAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 292232 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||||| ||| | || || ||||| ||| ||||| Sbjct 292233 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGAC 292292 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 292293 CTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || | || |||||| |||||||||||||||| Sbjct 291429 ACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 291488 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || || || | |||||| || || || || | ||||| |||||| || Sbjct 291489 CAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291548 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||||| ||| | || || ||||| || ||||| Sbjct 291549 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291608 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 291609 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || | || |||||| |||||||||||||||| Sbjct 291657 ACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 291716 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || || || | |||||| || || || || | ||||| |||||| || Sbjct 291717 CAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291776 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||||| ||| | || || ||||| || ||||| Sbjct 291777 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291836 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 291837 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 >seq1873 Length=396352 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||||||| || ||| |||||| || |||||||| |||| | Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| ||||| || || || || ||||| |||||||| || || Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| ||||| || | ||||| || ||||| ||||| || Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACC 292536 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || || || ||||| ||||| | ||||| ||||| |||||||| ||| Sbjct 292535 TCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTTC 292485 >seq1332 Length=523337 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || || || || | || ||| ||||||||||||||||||| | Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| ||||| ||||| || || || ||||| || || || ||| ||| Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| ||||| || || || | ||||| || || || || || Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACC 494624 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 494625 TCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | ||| |||||||||||||||||||| | Sbjct 494217 CCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAG 494276 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || | ||| ||||| ||||| |||| |||||||||||| ||| Sbjct 494277 AGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGA 494336 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || || || || || || || | ||||| || || | ||||||| Sbjct 494337 ATCCCTTCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACT 494396 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || || || || ||||| || || |||||||||||||| Sbjct 494397 TCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046680887467592