Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1456 149 7e-31 >seq1456 Length=366961 Score = 149 bits (164), Expect = 7e-31 Identities = 412/631 (65%), Gaps = 42/631 (7%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || || || || || ||||| || ||||||||||| |||| |||||| |||||| Sbjct 310837 AAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTT 310896 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 || || ||||| || || |||||||| | |||||||||||| || || || || ||| Sbjct 310897 AACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAG 310956 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 ||||||||||| || || |||||||| || | ||| |||| || | || | |||| Sbjct 310957 AAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAATGAGTATCA 311016 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC-AATTGC 23744 |||||| || | ||| | |||||| |||||||| | ||| | || || Sbjct 311017 CCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTA-GGTTGCTGATGGC 311075 Query 23745 TTTTAA--------------GAGAA-----AAGTT--------TTTTCTT--CATT---- 23771 || || ||||| || || || ||| | || Sbjct 311076 GTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCGTTCTGT 311135 Query 23772 ---ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAAT 23828 |||| | |||||||| ||||| || | |||||| || ||||| || || || || Sbjct 311136 TGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGAT 311195 Query 23829 AGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCT 23888 || ||||| | |||||||||||| | | || | | |||||| || | | || | Sbjct 311196 GGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACG 311255 Query 23889 TTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTT 23948 | | ||||| || || || |||||||| ||||||||||| || | |||||| Sbjct 311256 CTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGA 311315 Query 23949 TATAAAATGTCTTTCATC--AGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAA 24006 || || || | ||| | |||| | | ||||| ||| ||| ||| || || | | Sbjct 311316 GATGAAGTGACGTTCGCCGACCTTGAGA--CTATTCCAGTCACTAAAATCCTTGGAGAGA 311373 Query 24007 TCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCA 24066 || || || ||||| |||||||| ||| | || |||||| | |||||| ||| Sbjct 311374 TCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCG 311433 Query 24067 TTATGTTGTATTGGAAATATTACGAATCTAT 24097 | | ||| || || |||| || |||| || Sbjct 311434 TGGTATTGGATGGGGAATAGAACAAATCGAT 311464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521459657127200