Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1332 127 1e-24 seq1873 118 8e-22 seq1867 118 8e-22 >seq1332 Length=523337 Score = 127 bits (140), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| ||| |||||||| ||||||||||| | ||| ||| |||| || Sbjct 494006 CACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTC 494065 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || ||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 494066 CAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 494125 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || |||| | || || || | || ||||||| || || |||| Sbjct 494126 AATCTT-AGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCT 494184 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || || || || || ||||||||| Sbjct 494185 TTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| ||| |||||||||||||| || | ||| ||| |||| ||| Sbjct 494235 ACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCC 494294 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||||| ||||| |||| ||| || || || | || | |||||||| ||| Sbjct 494295 AATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCCTGA 494354 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||| | || | ||||| || ||||| || |||| || || || || Sbjct 494355 ATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTC 494414 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || ||||| || ||||| Sbjct 494415 CCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||||||||||||||| || | || ||| | || || Sbjct 494463 ACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCT 494522 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || ||||| ||||||||||| | || | |||||||| || Sbjct 494523 AGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCTTGA 494582 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| || | || ||||| | || || |||||| Sbjct 494583 ATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTCTTT 494642 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||| || ||||| Sbjct 494643 CCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1873 Length=396352 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || || |||| || ||||| || | ||| || || || ||||||||||| Sbjct 292718 ATGCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCA 292659 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || || |||| ||||| ||||| || || || ||||| || || ||||||| | Sbjct 292658 GAAAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGA 292599 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||||| || ||||| || | || | ||||| || | | ||| Sbjct 292598 GGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCA 292539 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 292538 ACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 >seq1867 Length=410790 Score = 118 bits (130), Expect = 8e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCG 44185 |||||| || || ||| || ||||||||||||||||||| ||||| || |||| Sbjct 315026 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTT--CGACCGTCT 315083 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || || || |||||||| |||||||||||||| || | || | ||||| || || Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||||| | | ||||| ||| | ||| || || | || |||||| Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 315203 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||| || || |||||| Sbjct 315204 TTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 118 bits (130), Expect = 8e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| || || ||| || ||||||||||||||||| Sbjct 315233 CATGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATC 315292 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || |||| || || || || |||||||| |||||||||||||| || Sbjct 315293 GGACAGAGTT--CGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCA 315350 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||| | | | ||||| ||| | | Sbjct 315351 GGTGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCT 315410 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || ||||| || || || ||||||||||| |||||||| Sbjct 315411 TCAACTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359971323658716