Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1867 143 6e-29 seq1332 134 3e-26 >seq1867 Length=410790 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || || || || || ||||||||||| || || ||| ||| Sbjct 315232 CAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC--- 315176 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| ||||| || || |||||||| ||||||||||| ||||| || |||||| Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || || ||||| ||||| || ||||| || | ||||| ||||||| ||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || || ||||| || Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGT 315027 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| |||||||| || || || || || || |||||||| || || ||| ||| Sbjct 315460 CAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGC--- 315404 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| ||||| || || |||||||| ||||| ||||| ||||| || |||||| Sbjct 315403 GATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 315344 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || || ||||| ||||| || ||||| || | ||||| ||||||| ||| Sbjct 315343 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315284 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || || ||||| || Sbjct 315283 ATCCAAAAAGAATCCACTCTCCATCTGGT 315255 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || |||||||||||||| || | ||| Sbjct 291425 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| || || ||||| ||||| || ||||||||| Sbjct 291365 ACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAA 291306 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || || || || | ||| | | ||||| ||| || Sbjct 291305 CGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAACATC 291246 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || |||| | |||||| Sbjct 291245 CAGAAAGAGTCTACTTTGCACTTGGTTTTG 291216 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || |||||||||||||| || | ||| Sbjct 291653 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| || || ||||| ||||| || ||||||||| Sbjct 291593 ACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAA 291534 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| | ||||| || | || | | || || ||| || Sbjct 291533 CGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACATC 291474 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || || || || Sbjct 291473 CAGAAAGAATCTACCCTTCACCTAGT 291448 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || |||||||||||||| || | ||| Sbjct 291881 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 291822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| || || ||||| ||||| || ||||||||| Sbjct 291821 ACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAA 291762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| | ||||| || | || | | || || ||| || Sbjct 291761 CGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACATC 291702 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || || || || Sbjct 291701 CAGAAAGAATCTACCCTTCACCTAGT 291676 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || |||||||||||||| || | ||| Sbjct 292109 CAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGTGAC 292050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| || || ||||| ||||| || ||||||||| Sbjct 292049 ACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAA 291990 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || || || || | || | | || || ||| || Sbjct 291989 CGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAACATC 291930 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || || || || Sbjct 291929 CAGAAAGAATCTACCCTTCACCTAGT 291904 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || || ||||| || || || || || || ||||| || ||||| || ||| || Sbjct 292337 CAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAG-GCTAGCGA 292279 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| || |||||||| ||| |||||||| || || ||||| ||||| || |||||||| Sbjct 292278 CACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCA 292219 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| ||||| ||||| || ||||| | ||||| || | || | | || || ||| | Sbjct 292218 ACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAACAT 292159 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||||||| || || || || || Sbjct 292158 CCAGAAAGAATCTACCCTTCACCTAGT 292132 >seq1332 Length=523337 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | |||||||| || || || |||||||| || || Sbjct 494668 CAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGAGTGAT 494609 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||| || || ||||| || || || || ||||| Sbjct 494608 ACCATCGAGAATGTGAAGGCTAAGATTCAAGATAAGGAAGGCATTCCACCTGATCAGCAG 494549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||||| ||||||||| | |||||| | || || ||| || Sbjct 494548 CGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACAACATC 494489 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || || || ||| Sbjct 494488 CAAAAGGAATCGACTCTTCACCTCGTT 494462 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 |||||||| || ||||| || || ||||| || ||||| || ||||| || ||| || Sbjct 494212 CAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAG-GCTAGTGA 494154 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||||||||| ||| |||||||| || || || || || ||||| || ||||| Sbjct 494153 TACGATCGAGAACGTTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCAGCA 494094 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | || || || || || ||| | ||||| || | ||||| | ||||| ||| | Sbjct 494093 GCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAACAT 494034 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 494033 TCAAAAGGAATCCACTCTTCAT 494012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203664141639512