Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1867 109 5e-19 seq1332 105 6e-18 >seq1867 Length=410790 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | ||||||||| || ||| || || || ||||| || ||||| Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || || |||||||| || |||| ||||| ||||| | || Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||| | ||| | || | ||||| | | || ||||| | || || Sbjct 315129 ATGCCTTCTTTGT-CTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAAC 315187 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 315188 TTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || || || ||||| ||||| ||||| || Sbjct 291886 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291945 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || || || ||||| ||||| || ||||| || ||||| | || Sbjct 291946 AATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292005 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||| || ||| | || |||| ||| || ||||| || | ||| || Sbjct 292006 ATGCCTTCCTTATCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 292064 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || ||||||||||| Sbjct 292065 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || |||| |||| || ||| ||||| ||||| || || || Sbjct 291202 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGAC 291261 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || || || ||||| ||||| || ||||| || ||||| | || Sbjct 291262 AAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291321 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||| || ||| | || |||| ||| || ||||| || | ||| || Sbjct 291322 ATGCCTTCCTTATCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291380 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || ||||||||||| Sbjct 291381 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || || || ||||| ||||| ||||| || Sbjct 291430 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291489 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | || ||||| ||||| || ||||| || ||||| | || Sbjct 291490 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291549 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||| || ||| | || |||| ||| || ||||| || | ||| || Sbjct 291550 ATGCCTTCCTTATCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291608 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || ||||||||||| Sbjct 291609 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || || || ||||| ||||| ||||| || Sbjct 291658 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291717 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | || ||||| ||||| || ||||| || ||||| | || Sbjct 291718 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291777 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||| || ||| | || |||| ||| || ||||| || | ||| || Sbjct 291778 ATGCCTTCCTTATCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291836 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || ||||||||||| Sbjct 291837 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || || || ||||| ||||| ||||| || Sbjct 292114 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 292173 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | || ||||| ||||| || ||||| || ||||| | || Sbjct 292174 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292233 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||| || ||| | || |||| ||| || |||||||| | ||| || Sbjct 292234 ATGCCTTCCTTATCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGAC 292292 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || || |||||||| Sbjct 292293 CTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 >seq1332 Length=523337 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || ||||| ||||| || || ||||| | || || ||||| ||||| ||||| Sbjct 494481 TCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAA 494540 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGA 41790 |||| |||||| || || | |||| || ||||| || ||| | || || |||| Sbjct 494541 ATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCT-TGAATCTTAGCCTTCACATT 494599 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || || |||| ||| ||||| | ||||| || || || |||| |||||| || Sbjct 494600 CTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCAC 494659 Query 41851 GAAAATCTGCAT 41862 |||||||||||| Sbjct 494660 GAAAATCTGCAT 494671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462278873777600