Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq31829 161 1e-34 seq230146 98.7 1e-15 >seq31829 Length=2224 Score = 161 bits (178), Expect = 1e-34 Identities = 243/343 (71%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||| || | || || || | || || |||||||||| ||| Sbjct 1765 GAGCCACTGCTGATCGAGAATCCACATCGTTTTGTCTTGTTTCCAATACAATACCACGAC 1824 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 | |||| | ||||| || |||| || || |||||||| || || ||||| || || Sbjct 1825 GTATGGCAATTTTACAAGAAAGCCGTTGCCTCCTTCTGGACAGTAGAAGAGGTTGATCTT 1884 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || |||||| | ||||| ||| | | || | |||||| ||||| ||| | Sbjct 1885 TCAAAGGACTTGTCGCACTGG-AGCAGTCTTAAAGTGGGCGAGCGTCATTTTATCTCCTA 1943 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| |||| || ||||| || ||||| || ||||| |||||| || | || ||||| Sbjct 1944 CGTCTTGGCATTCTTCGCTGCAAGCGATGGGATCGTACTAGAGAATTTGCTTGAACGTTT 2003 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||||||||| ||| | | ||| || ||||| ||||| | ||||| ||||| || Sbjct 2004 CAGTCAGGAGGTTCAGATACCGGAGATACGCTGCTTTTACGGTATGCAGATTGCCATCGA 2063 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| | ||||| |||||||| || ||||||||||| ||| Sbjct 2064 AAACATTCACTCTGAAATGTACTCTCTTCTCATCGACACTTAC 2106 >seq230146 Length=915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||||||||| || || || || || |||| || |||| || Sbjct 790 ATGCAAATATTTGTGAAAACGCTCACCGGTAAGACAATTACTCTCGAAGTGGAAGGCAGT 731 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | |||||||| ||||||||||| || || | || ||| Sbjct 730 GATACGATCGAAAATGTGAAAGCAAAAATTCAGGACAAAGAGGGTATTCCACCAGATCAG 671 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || ||||| ||||| || |||| || || || ||||||||| Sbjct 670 CAACGTTTGATTTTTGCTGGCAAGCAGCTCGAAGACGGACGTACACTATCTGACTACAAC 611 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || | || || || | || | |||||| | || || Sbjct 610 ATACAAAAAGAATCAACACTACACTTGGTCCTCCGCTTGCGTGGTGG 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512137300430880