Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq31829 118 9e-22 >seq31829 Length=2224 Score = 118 bits (130), Expect = 9e-22 Identities = 239/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 ||| ||||| || |||||||| | | | |||||| ||||||| || |||| | || Sbjct 1764 TGAGCCACTGCTGATCGAGAATCCACATCGTTTTGTCTTGTTTCCAATACAATACCACGA 1823 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 | | ||| | | ||||| || || | || || || ||||| || ||||| || || || Sbjct 1824 CGTATGGCAATTTTACAAGAAAGCCGTTGCCTCCTTCTGGACAGTAGAAGAGGTTGATCT 1883 Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACA 57688 || ||||| || | ||| || |||| ||| | ||||||| | Sbjct 1884 TTCAAAGGACTTGTCGCACTGGAGCAGTCTTAAAGTGGGCGAGCGTCATTTTATCTCCTA 1943 Query 57689 CGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATT 57748 ||| ||||| || ||||| ||| |||||| || || ||||||||| | ||| | | Sbjct 1944 CGTCTTGGCATTCTTCGCTGCAAGCGATGGGATCGTACTAGAGAATTTGCTTGAACG--T 2001 Query 57749 TTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 |||| || || || || | ||||| | ||||||||||| | || | ||||| Sbjct 2002 TTCAGTCAGGAGGTTCAGATACCGGAGATACGCTGCTTTTACGGTATGCAGATTGCCATC 2061 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 |||||| | || || |||||||| || || |||||||| || ||| | ||||| Sbjct 2062 GAAAACATTCACTCTGAAATGTACTCTCTTCTCATCGACACTTACATTAAGGA 2114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443099947980960