Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq230146 132 5e-26 >seq230146 Length=915 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || || | || || || | ||| |||||||||||||||||||| || Sbjct 564 CCACCACGCAAGCGGAGGACCAAGTGTAGTGTTGATTCTTTTTGTATGTTGTAGTCAGAT 623 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||||||| || || |||||| | |||| |||||||||||| || || Sbjct 624 AGTGTACGTCCGTCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 683 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||||| ||| | | ||| | ||| || || ||| ||| Sbjct 684 ATACCCTCTTTGTCCTGAATTTTTGCTTTCACATTTTCGATCGTATCACTGCCTTCCACT 743 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||| | ||||| || |||||||||||| Sbjct 744 TCGAGAGTAATTGTCTTACCGGTGAGCGTTTTCACAAATATTTGCATA 791 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||||||| | ||||| ||||||||||||||||| |||||||| | Sbjct 792 CCACCTCGCAGACGCAAAACCAGATGAAGGGTAGATTCTTTTTGTATATTGTAATCCGAC 851 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | || ||||| || || || ||| | || || || || || |||||||| Sbjct 852 AGGGTGCGCCCATCCTCGAGCTGCTTGCCCGCAAAAATGAGGCGCTGTTGGTCGGGAGGA 911 Query 143078 AT 143079 || Sbjct 912 AT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503981579288160