Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18524 100 7e-16 seq26384 87.8 5e-12 >seq18524 Length=2666 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| |||| || ||| ||| || |||| ||| || || ||||| | Sbjct 576 TTCACTCATGCCTCGCCCACTCTGTTCAACAGCGGTACTCCTAAACCCCAAATGTCAAGT 635 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||||| | ||| |||| ||| ||| || ||||| | ||| ||||| ||| | Sbjct 636 TGCTTTCTTCTCACAATTAAGGGTGATAGCATTGAAGGTATATATGATACACTGAAGGAC 695 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT 363704 || ||| | || || || ||||||||||| |||||||| Sbjct 696 TGCGCTATCATATCAAAAAATGCAGGCGGTATTGGTGT 733 >seq26384 Length=2369 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||||| || | || || ||||| ||||| || | ||||||||||| ||| ||||| Sbjct 1120 GCCATCATCGAAGCTCAAATCGAGACTGGAACCCCTTTCATGTTGTACAAGGATGCGTGC 1179 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 || |||||||| ||||| |||||| | || || |||| ||||| || || || || Sbjct 1180 AATCGCAAGTCAAACCATCAGCACTTGGGCACTATTCGTTGCAGCAATCTTTGCACTGAA 1239 Query 364249 ATTATTGAATA 364259 || |||| || Sbjct 1240 ATAGTTGAGTA 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1295362389616716