Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq273507 123 2e-23 seq183909 122 6e-23 seq41031 122 6e-23 seq420478 120 2e-22 seq275020 118 7e-22 seq32369 109 4e-19 seq174525 91.5 1e-13 >seq273507 Length=837 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||||||||||||||||||| ||||||| || |||||||| Sbjct 360 AAGCCCGTTCCCTTGGATGTGGTTTCGCTAGATAGTGGATAGGGACAGTGGGAATCTCGT 419 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||| ||| Sbjct 420 TAATCCATTCATGCGCGTCACTAATTAGACGAC 452 >seq183909 Length=1062 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||||||||||||||||||||| || |||| ||| Sbjct 573 AAGCCCGTTCCCTTGGCTGTGTTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCACGT 514 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| |||||||| || Sbjct 513 TAATCCATTCATGCGCGTCACTAGTTAGATGATGA 479 >seq41031 Length=2030 Score = 122 bits (134), Expect = 6e-23 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 ||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| Sbjct 293 AAGCCCGTTCCTTTGGCTGTGGTCTCGCTAGATAGCAGATAGGGACAGTGAGAATCTCGT 234 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 233 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 199 >seq420478 Length=665 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||| ||||||||||||| |||||||||||| |||||||||||| || ||||||||| Sbjct 70 AGCTCGTTCCCTTGGCTATGGTTTCGCTAGCTAGTAGATAGGGAGAGTGGGAATCTCGTT 129 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||||||||||||||||||||| Sbjct 130 AATCCACTCATGCGCGTCACTAATTAGATGACGA 163 >seq275020 Length=835 Score = 118 bits (130), Expect = 7e-22 Identities = 77/85 (91%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 25912 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTC 25966 |||||||||||||||||||||||||||||||||| || ||| |||||||||| ||| Sbjct 1 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATTTCGTTAATCCATTC 60 Query 25967 ATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||||| Sbjct 61 ATGCGCGTCACTAATTAGATGACGA 85 >seq32369 Length=2212 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| | ||||||||||||||||||||||||||| || |||| ||| Sbjct 958 AAGCCCGTTCCCTTAGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGCAATCACGT 1017 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | || |||||||||||||||||||||| || Sbjct 1018 GAATGCATTTATGCGCGTCACTAATTAGATGATGA 1052 >seq174525 Length=1098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||| |||||||||| |||||| ||||||||||| |||||| || |||||||||| Sbjct 270 GCCCATTCCCTTGGCCATGGTTTTGCTAGATAGTAAATAGGGACGGTGGGAATCTCGTTA 329 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||| ||| |||||||| |||||| Sbjct 330 ATCCATTCATGTCTGTCTCTAATTAGTTGACGA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332993727011078