Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09-
24] 478,538 sequences; 547,921,014 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq273507 123 2e-23
seq183909 122 6e-23
seq41031 122 6e-23
seq420478 120 2e-22
seq275020 118 7e-22
seq32369 109 4e-19
seq174525 91.5 1e-13
>seq273507
Length=837
Score = 123 bits (136), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||
Sbjct 360 AAGCCCGTTCCCTTGGATGTGGTTTCGCTAGATAGTGGATAGGGACAGTGGGAATCTCGT 419
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| |||||||||||||||||||||| |||
Sbjct 420 TAATCCATTCATGCGCGTCACTAATTAGACGAC 452
>seq183909
Length=1062
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||| |||||||||||||||||||||| || |||| |||
Sbjct 573 AAGCCCGTTCCCTTGGCTGTGTTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCACGT 514
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||| |||||||| ||
Sbjct 513 TAATCCATTCATGCGCGTCACTAGTTAGATGATGA 479
>seq41031
Length=2030
Score = 122 bits (134), Expect = 6e-23
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956
||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct 293 AAGCCCGTTCCTTTGGCTGTGGTCTCGCTAGATAGCAGATAGGGACAGTGAGAATCTCGT 234
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 233 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 199
>seq420478
Length=665
Score = 120 bits (132), Expect = 2e-22
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957
||| ||||||||||||| |||||||||||| |||||||||||| || |||||||||
Sbjct 70 AGCTCGTTCCCTTGGCTATGGTTTCGCTAGCTAGTAGATAGGGAGAGTGGGAATCTCGTT 129
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| |||||||||||||||||||||||||||
Sbjct 130 AATCCACTCATGCGCGTCACTAATTAGATGACGA 163
>seq275020
Length=835
Score = 118 bits (130), Expect = 7e-22
Identities = 77/85 (91%), Gaps = 5/85 (6%)
Strand=Plus/Plus
Query 25912 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTC 25966
|||||||||||||||||||||||||||||||||| || ||| |||||||||| |||
Sbjct 1 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATTTCGTTAATCCATTC 60
Query 25967 ATGCGCGTCACTAATTAGATGACGA 25991
|||||||||||||||||||||||||
Sbjct 61 ATGCGCGTCACTAATTAGATGACGA 85
>seq32369
Length=2212
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||| | ||||||||||||||||||||||||||| || |||| |||
Sbjct 958 AAGCCCGTTCCCTTAGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGCAATCACGT 1017
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||| | || |||||||||||||||||||||| ||
Sbjct 1018 GAATGCATTTATGCGCGTCACTAATTAGATGATGA 1052
>seq174525
Length=1098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 76/93 (82%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||| |||||||||| |||||| ||||||||||| |||||| || ||||||||||
Sbjct 270 GCCCATTCCCTTGGCCATGGTTTTGCTAGATAGTAAATAGGGACGGTGGGAATCTCGTTA 329
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| |||||| ||| |||||||| ||||||
Sbjct 330 ATCCATTCATGTCTGTCTCTAATTAGTTGACGA 362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 332993727011078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |